Publications

The CGR has contributed to project design, method development/optimisation, data generation or analysis for the following publications.

Selected publications from 2025/2026

• Pilgrim, J., Widlake, E., Wilson, R., Vaux, A.G., Medlock, J.M., Darby, A.C., Baylis, M. and Blagrove, M.S., 2026. Mosquito viromes across England and Wales reveal hidden arbovirus signals and limited ecological structuring. Frontiers in Microbiology, 17, p.1749228.
• Gillespie A, Haldenby S, Blowey R, Carter S, Evans NJ. In vitro susceptibility of bovine digital dermatitis treponemes to conventional and novel antimicrobial agents, and evidence of heavy metal resistance. Anaerobe. 2026 Feb 2:103029. doi: 10.1016/j.anaerobe.2026.103029.
• Mukhtar, A., Giannoudis, A., Jørgensen, B., Wu, D., Liu, X., Mustafa, K.B.E., Gjengedal, G.C.G., Adegbite, O., Mieszkowska, A., Yu, L.G. and Gurzawska-Comis, K., 2025. Interaction of potato-derived RG-I with galectin-3 and gene regulation in human mesenchymal stem cells. BMC Biotechnology, 25(1), p.115.
• Paine, L.W., Higham, J.P., Barker, K.H., Pavlou, S., Welsh, F., Smith, E.S.J. and Bulmer, D.C., 2025. IL-17 sensitises sensory neurons and colonic afferents to noxious stimuli in a PI3K dependent manner. bioRxiv, pp.2025-04.
• Mulindwa, J., Lujumba, I., Musiime, C., Namulondo, J., Kimuda, M.P., Nyangiri, O., Cuu, G., Mwubaha, C., Tukwasibwe, S., Ssemaganda, A. and Ssewanyana, I., 2025. High Schistosoma mansoni infection intensity is associated with distinct gut microbiota and low levels of systemic cytokines in children along the Albert-Nile, Northern Uganda. BMC microbiology, 25(1), p.506.
• Fresneda Alarcon M, Abdullah GA, Beggs JA, Kynoch I, Sellin A, Cross A, Haldenby S, Antczak P, Gutiérrez EC, Wright HL. Complexity of the neutrophil transcriptome in early and severe rheumatoid arthritis. A role for microRNAs? J Leukoc Biol. 2025 Jun 18:qiaf090. doi: 10.1093/jleuko/qiaf090
• Cunningham-Oakes E, Perez-Sepulveda BM, Li Y, Hinton JCD, Nelson CA, McIntyre KM, Wardeh M, Haldenby S, Gregory R, Iturriza-Gómara M, Hertz-Fowler C, O'Brien SJ, Cunliffe NA, Darby AC; INTEGRATE consortium. Enhancing infectious intestinal disease diagnosis through metagenomic and metatranscriptomic sequencing of 1000 human diarrhoeal samples. Genome Med. 2025 May 20;17(1):55. doi: 10.1186/s13073-025-01478-w. PMID: 40390150.
• Adams, S.E., Cawley, A.K., Arnold, D., Hoptroff, M.J., Slomka, V., Matheson, J.R., Marriott, R.E., Gemmell, M.R. and Marsh, P.D., 2025. A randomised, double-blind clinical study into the effect of zinc citrate trihydrate toothpaste on oral plaque microbiome ecology and function. Scientific Reports, 15(1), p.8136.
• Ebrahim, H., Haldenby, S., Moore, M.P., Dashti, A.A., Floyd, R.V. and Fothergill, J.L., 2025. Genotypic and phenotypic analyses of two distinct sets of Pseudomonas aeruginosa urinary tract isolates. Journal of Medical Microbiology, 74(2), p.001971.
• Renaudineau, Y., Charras, A., Natoli, V., Congy-Jolivet, N., Haldenby, S., Liu, X., Fang, Y., Smith, E.M., Beresford, M.W., Hedrich, C.M. and Roberts, C., 2025. Across ancestries, HLA-B* 08: 01∼ DRB1* 03: 01 (DR3) and HLA-DQA* 01: 02 (DR2) increase the risk to develop juvenile-onset systemic lupus erythematosus through low complement C4 levels. Journal of Translational Autoimmunity, p.100268.
• Lehr K, Oosterlinck B, Then CK, Gemmell MR, Gedgaudas R, Bornschein J, Kupcinskas J, Smet A, Hold G, Link A; ENIGMA: European Network for the Investigation of Gastrointestinal Mucosal Alterations. Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition. mSystems. 2025 Jan 28:e0135824. 
• Walters, M., Skovgaard, K., Heegaard, P.M., Fang, Y., Kharaz, Y.A., Bundgaard, L., Skovgaard, L.T., Jensen, H.E., Andersen, P.H., Peffers, M.J. and Jacobsen, S., 2025. Identification and characterisation of temporal abundance of microRNAs in synovial fluid from an experimental equine model of osteoarthritis. Equine veterinary journal.
• Hares, M.F., Griffiths, B.E., Barningham, L., Vamos, E.E., Gregory, R., Duncan, J.S., Oikonomou, G., Stewart, C.J. and Coombes, J.L., 2025. Progression of the faecal microbiome in preweaning dairy calves that develop cryptosporidiosis. Animal microbiome, 7(1), p.3.

Publications from previous years can be found by following the links below:

• Selected publications 2024
• Selected publications 2023 (PDF, 303KB)
• Selected publications 2022 (PDF, 223KB)
• Selected publications 2021 (PDF, 263KB)
• Selected publications 2020 (PDF, 261KB)
• Selected publications 2019 (PDF, 269KB)
• Selected publications 2018. (PDF, 234KB)

The CGR has the following Research Resource Identifier (RRID): SCR_027394