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2024

2023

Genome assembly of the dyeing poison frog provides insights into the dynamics of transposable element and genome-size evolution

DOI
10.1101/2023.11.06.565769
Preprint

The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis.

Pascall, D. J., Vink, E., Blacow, R., Bulteel, N., Campbell, A., Campbell, R., . . . COVID-19 Genomics UK (COG-UK) Consortium. (2023). The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis.. PloS one, 18(4), e0284187. doi:10.1371/journal.pone.0284187

DOI
10.1371/journal.pone.0284187
Journal article

2022

Rate of COVID-19 infection and 30 day mortality between blue and green (dedicated COVID-19 safe) pathways: Results from phase 1 and 2 of the UK foot and ankle COVID-19 national (UK-FAlCoN) audit

Malhotra, K., Mangwani, J., Houchen-Wollof, L., Mason, L. W., & UK, F. A. C. (2022). Rate of COVID-19 infection and 30 day mortality between blue and green (dedicated COVID-19 safe) pathways: Results from phase 1 and 2 of the UK foot and ankle COVID-19 national (UK-FAlCoN) audit. FOOT AND ANKLE SURGERY, 28(7), 1055-1063. doi:10.1016/j.fas.2022.02.017

DOI
10.1016/j.fas.2022.02.017
Journal article

2021

2020

2019

2018

2017

Large scale and significant expression from pseudogenes in <i>Sodalis glossinidius</i> - a facultative bacterial endosymbiont

DOI
10.1101/124388
Preprint

2016

Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach

Aljabr, W., Touzelet, O., Pollakis, G., Wu, W., Munday, D. C., Hughes, M., . . . Hiscox, J. A. (2016). Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach. JOURNAL OF VIROLOGY, 90(10), 4876-4888. doi:10.1128/JVI.02349-15

DOI
10.1128/JVI.02349-15
Journal article

NGS-based assay for frequent newborn inherited diseases: from development to implementation

DOI
10.1101/050419
Preprint

2015

Molecular tools for studying the major malaria vector <i>Anopheles funestus</i>: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis

Weedall, G. D., Irving, H., Hughes, M. A., & Wondji, C. S. (2015). Molecular tools for studying the major malaria vector <i>Anopheles funestus</i>: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis. BMC GENOMICS, 16. doi:10.1186/s12864-015-2114-z

DOI
10.1186/s12864-015-2114-z
Journal article

Phylogenomics of the killer whale indicates ecotype divergence in sympatry

Moura, A. E., Kenny, J. G., Chaudhuri, R. R., Hughes, M. A., Reisinger, R. R., de Bruyn, P. J. N., . . . Hoelzel, A. R. (2015). Phylogenomics of the killer whale indicates ecotype divergence in sympatry. HEREDITY, 114(1), 48-55. doi:10.1038/hdy.2014.67

DOI
10.1038/hdy.2014.67
Journal article

2014

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

Moura, A. E., Kenny, J. G., Chaudhuri, R., Hughes, M. A., Welch, A. J., Reisinger, R. R., . . . Hoelzel, A. R. (2014). Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift. MOLECULAR ECOLOGY, 23(21), 5179-5192. doi:10.1111/mec.12929

DOI
10.1111/mec.12929
Journal article

Novel Host-Related Virulence Factors Are Encoded by Squirrelpox Virus, the Main Causative Agent of Epidemic Disease in Red Squirrels in the UK

Darby, A. C., McInnes, C. J., Kjaer, K. H., Wood, A. R., Hughes, M., Martensen, P. M., . . . Chantrey, J. (2014). Novel Host-Related Virulence Factors Are Encoded by Squirrelpox Virus, the Main Causative Agent of Epidemic Disease in Red Squirrels in the UK. PLOS ONE, 9(7). doi:10.1371/journal.pone.0096439

DOI
10.1371/journal.pone.0096439
Journal article

2013

Characterisation of the genomes of four putative vesiculoviruses: tench rhabdovirus, grass carp rhabdovirus, perch rhabdovirus and eel rhabdovirus European X

Stone, D. M., Kerr, R. C., Hughes, M., Radford, A. D., & Darby, A. C. (2013). Characterisation of the genomes of four putative vesiculoviruses: tench rhabdovirus, grass carp rhabdovirus, perch rhabdovirus and eel rhabdovirus European X. ARCHIVES OF VIROLOGY, 158(11), 2371-2377. doi:10.1007/s00705-013-1711-x

DOI
10.1007/s00705-013-1711-x
Journal article

2012

Analysis of gene expression from the <i>Wolbachia</i> genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis

Darby, A. C., Armstrong, S. D., Bah, G. S., Kaur, G., Hughes, M. A., Kay, S. M., . . . Makepeace, B. L. (2012). Analysis of gene expression from the <i>Wolbachia</i> genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis. GENOME RESEARCH, 22(12), 2467-2477. doi:10.1101/gr.138420.112

DOI
10.1101/gr.138420.112
Journal article

Genome Sequence for "<i>Candidatus</i> Mycoplasma haemominutum," a Low-Pathogenicity Hemoplasma Species

Barker, E. N., Darby, A. C., Helps, C. R., Peters, I. R., Hughes, M. A., Radford, A. D., . . . Tasker, S. (2012). Genome Sequence for "<i>Candidatus</i> Mycoplasma haemominutum," a Low-Pathogenicity Hemoplasma Species. JOURNAL OF BACTERIOLOGY, 194(4), 905-906. doi:10.1128/JB.06560-11

DOI
10.1128/JB.06560-11
Journal article

2011

Molecular characterization of the uncultivatable hemotropic bacterium <i>Mycoplasma haemofelis</i>

Barker, E. N., Darby, A. C., Helps, C. R., Peters, I. R., Heesom, K. J., Arthur, C. J., . . . Tasker, S. (2011). Molecular characterization of the uncultivatable hemotropic bacterium <i>Mycoplasma haemofelis</i>. VETERINARY RESEARCH, 42. doi:10.1186/1297-9716-42-83

DOI
10.1186/1297-9716-42-83
Journal article

A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing

Gregory, R., Darby, A. C., Irving, H., Coulibaly, M. B., Hughes, M., Koekemoer, L. L., . . . Wondji, C. S. (2011). A <i>De Novo</i> Expression Profiling of <i>Anopheles funestus</i>, Malaria Vector in Africa, Using 454 Pyrosequencing. PLOS ONE, 6(2). doi:10.1371/journal.pone.0017418

DOI
10.1371/journal.pone.0017418
Journal article

2010

Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp <i>zooepidemicus</i>, <i>szeF</i>, <i>szeN</i>, and <i>szeP</i>

Paillot, R., Darby, A. C., Robinson, C., Wright, N. L., Steward, K. F., Anderson, E., . . . Waller, A. S. (2010). Identification of Three Novel Superantigen-Encoding Genes in <i>Streptococcus equi</i> subsp <i>zooepidemicus</i>, <i>szeF</i>, <i>szeN</i>, and <i>szeP</i>. INFECTION AND IMMUNITY, 78(11), 4817-4827. doi:10.1128/IAI.00751-10

DOI
10.1128/IAI.00751-10
Journal article

Identification of Three Novel Superantigen-Encoding Genes in<i>Streptococcus equi</i>subsp.<i>zooepidemicus</i>,<i>szeF</i>,<i>szeN</i>, and<i>szeP</i>

Paillot, R., Darby, A. C., Robinson, C., Wright, N. L., Steward, K. F., Anderson, E., . . . Waller, A. S. (2010). Identification of Three Novel Superantigen-Encoding Genes in<i>Streptococcus equi</i>subsp.<i>zooepidemicus</i>,<i>szeF</i>,<i>szeN</i>, and<i>szeP</i>. Infection and Immunity, 78(11), 4817-4827. doi:10.1128/iai.00751-10

DOI
10.1128/iai.00751-10
Journal article

Characteristics of the genome of <i>Arsenophonus nasoniae</i>, son-killer bacterium of the wasp <i>Nasonia</i>

Darby, A. C., Choi, J. -H., Wilkes, T., Hughes, M. A., Werren, J. H., Hurst, G. D. D., & Colbourne, J. K. (2010). Characteristics of the genome of <i>Arsenophonus nasoniae</i>, son-killer bacterium of the wasp <i>Nasonia</i>. INSECT MOLECULAR BIOLOGY, 19, 75-89. doi:10.1111/j.1365-2583.2009.00950.x

DOI
10.1111/j.1365-2583.2009.00950.x
Journal article

2009

Application of ESTs in microarray analysis.

Li, W., Olohan, L., Williams, D., Hughes, M., Gracey, A., & Cossins, A. (2009). Application of ESTs in microarray analysis.. Methods in molecular biology (Clifton, N.J.), 533, 289-309. doi:10.1007/978-1-60327-136-3_14

DOI
10.1007/978-1-60327-136-3_14
Journal article

Expressed Sequence Tags (ESTs)

Parkinson, J. (Ed.) (2009). Expressed Sequence Tags (ESTs). In . Humana Press. doi:10.1007/978-1-60327-136-3

DOI
10.1007/978-1-60327-136-3
Chapter

2008

Genomic resources and microarrays for the common carp <i>Cyprinus carpio </i>L.

Williams, D. R., Li, W., Hughes, M. A., Gonzalez, S. F., Vernon, C., Vidal, M. C., . . . Cossins, A. R. (2008). Genomic resources and microarrays for the common carp <i>Cyprinus carpio </i>L.. Journal of Fish Biology, 72(9), 2095-2117. doi:10.1111/j.1095-8649.2008.01875.x

DOI
10.1111/j.1095-8649.2008.01875.x
Journal article

Genomic resources and microarrays for the common carp <i>Cyprinus carpio</i> L.

Williams, D. R., Li, W., Hughes, M. A., Gonzalez, S. F., Vernon, C., Vidal, M. C., . . . Cossins, A. R. (2008). Genomic resources and microarrays for the common carp <i>Cyprinus carpio</i> L.. JOURNAL OF FISH BIOLOGY, 72(9), 2095-2117. doi:10.1111/j.1095-8649.2008.01875.x

DOI
10.1111/j.1095-8649.2008.01875.x
Journal article

2007

Understanding the molecular basis of environmental tolerance through transcriptomic analysis of extreme phenotypic variants

Cossins, A., Vernon, C., Hughes, M., & Williams, D. (2007). Understanding the molecular basis of environmental tolerance through transcriptomic analysis of extreme phenotypic variants. Comparative Biochemistry and Physiology Part A: Molecular &amp; Integrative Physiology, 146(4), S150. doi:10.1016/j.cbpa.2007.01.303

DOI
10.1016/j.cbpa.2007.01.303
Journal article

Single gene differentiation by DNA-modified carbon electrodes using an AC impedimetric approach

Davis, F., Hughes, M. A., Cossins, A. R., & Higson, S. P. J. (2007). Single gene differentiation by DNA-modified carbon electrodes using an AC impedimetric approach. ANALYTICAL CHEMISTRY, 79(3), 1153-1157. doi:10.1021/ac061070c

DOI
10.1021/ac061070c
Journal article

Salinity adaptation and gene profiling analysis in the European eel (<i>Anguilla anguilla</i>) using microarray technology

Kalujnaia, S., McWilliam, I. S., Zaguinaiko, V. A., Feilen, A. L., Nicholson, J., Hazon, N., . . . Cramb, G. (2007). Salinity adaptation and gene profiling analysis in the European eel (<i>Anguilla anguilla</i>) using microarray technology. GENERAL AND COMPARATIVE ENDOCRINOLOGY, 152(2-3), 274-280. doi:10.1016/j.ygcen.2006.12.025

DOI
10.1016/j.ygcen.2006.12.025
Journal article

2006

Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity

Cossins, A., Fraser, J., Hughes, M., & Gracey, A. (2006). Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity. JOURNAL OF EXPERIMENTAL BIOLOGY, 209(12), 2328-2336. doi:10.1242/jeb.02256

DOI
10.1242/jeb.02256
Journal article

2005

Seasonally hibernating phenotype assessed through transcript screening

Williams, D. R., Epperson, L. E., Li, W. Z., Hughes, M. A., Taylor, R., Rogers, J., . . . Gracey, A. Y. (2005). Seasonally hibernating phenotype assessed through transcript screening. PHYSIOLOGICAL GENOMICS, 24(1), 13-22. doi:10.1152/physiolgenomics.00301.2004

DOI
10.1152/physiolgenomics.00301.2004
Journal article

1997

Zebedee: a novel copia-Ty1 family of transposable elements in the genome of the medically important mosquito Aedes aegypti.

Warren, A. M., Hughes, M. A., & Crampton, J. M. (1997). Zebedee: a novel copia-Ty1 family of transposable elements in the genome of the medically important mosquito Aedes aegypti.. Molecular & general genetics : MGG, 254(5), 505-513. doi:10.1007/s004380050445

DOI
10.1007/s004380050445
Journal article

1994

GENETIC MANIPULATION OF INSECT VECTORS AS A STRATEGY FOR THE CONTROL OF VECTOR-BORNE DISEASE

CRAMPTON, J. M., WARREN, A., LYCETT, G. J., HUGHES, M. A., COMLEY, I. P., & EGGLESTON, P. (1994). GENETIC MANIPULATION OF INSECT VECTORS AS A STRATEGY FOR THE CONTROL OF VECTOR-BORNE DISEASE. ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY, 88(1), 3-12. doi:10.1080/00034983.1994.11812828

DOI
10.1080/00034983.1994.11812828
Journal article

1992

MOLECULAR BIOLOGICAL APPROACHES TO THE STUDY OF VECTORS IN RELATION TO MALARIA CONTROL

CRAMPTON, J. M., COMLEY, I., EGGLESTON, P., HILL, S., HUGHES, M., KNAPP, T., . . . WARREN, A. (1992). MOLECULAR BIOLOGICAL APPROACHES TO THE STUDY OF VECTORS IN RELATION TO MALARIA CONTROL. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 87, 43-49. doi:10.1590/S0074-02761992000700005

DOI
10.1590/S0074-02761992000700005
Journal article