2023
Olsson-Brown, A., Yip, V., Ogiji, E. D., Jolly, C., Ressel, L., Sharma, A., . . . Carr, D. F. (2023). TNF-α-Mediated Keratinocyte Expression and Release of Matrix Metalloproteinase 9: Putative Mechanism of Pathogenesis in Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 143(6), 1023-+. doi:10.1016/j.jid.2022.11.024DOI: 10.1016/j.jid.2022.11.024
2021
Ball, A. L., Bloch, K. M., Rainbow, L., Liu, X., Kenny, J., Lyon, J. J., . . . Chadwick, A. E. (n.d.). Assessment of the impact of mitochondrial genotype upon drug-induced mitochondrial dysfunction in platelets derived from healthy volunteers. Archives of Toxicology. doi:10.1007/s00204-021-02988-3DOI: 10.1007/s00204-021-02988-3
2020
Balaskas, P., Green, J. A., Haqqi, T. M., Dyer, P., Kharaz, Y. A., Fang, Y., . . . Peffers, M. J. (2020). Small Non-Coding RNAome of Ageing Chondrocytes. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21(16). doi:10.3390/ijms21165675DOI: 10.3390/ijms21165675
Thornton, S., Coupland, S. E., Olohan, L., Sibbring, J. S., Kenny, J. G., Hertz-Fowler, C., . . . Kalirai, H. (2020). Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12(4). doi:10.3390/cancers12041039DOI: 10.3390/cancers12041039
Zhu, W., Liu, X., Hughes, M., de Crécy-Lagard, V., & Richards, N. G. J. (2020). Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557.. Microbiology Resource Announcements, 9(14). doi:10.1128/mra.01434-19DOI: 10.1128/mra.01434-19
Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., . . . Bailey, N. W. (2020). Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. EVOLUTION LETTERS, 4(1), 19-33. doi:10.1002/evl3.148DOI: 10.1002/evl3.148
2019
Hope, W., Stone, N. R. H., Johnson, A., McEntee, L., Farrington, N., Santoro-Castelazo, A., . . . Bicanic, T. (2019). Fluconazole Monotherapy Is a Suboptimal Option for Initial Treatment of Cryptococcal Meningitis Because of Emergence of Resistance.. mBio, 10(6). doi:10.1128/mbio.02575-19DOI: 10.1128/mbio.02575-19
Bosworth, A., Dowall, S. D., Armstrong, S., Liu, X., Dong, X., Bruce, C. B., . . . Hiscox, J. A. (2019). Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells. VIRUSES-BASEL, 11(11). doi:10.3390/v11111023DOI: 10.3390/v11111023
Lum, F. -M., Narang, V., Hue, S., Chen, J., McGovern, N., Rajarethinam, R., . . . Ng, L. F. P. (n.d.). Immunological observations and transcriptomic analysis of trimester-specific full-term placentas from three Zika virus-infected women. Clinical and Translational Immunology, 8(11). doi:10.1002/cti2.1082DOI: 10.1002/cti2.1082
2018
Mahalhal, A., Williams, J. M., Johnson, S., Ellaby, N., Duckworth, C. A., Burkitt, M. D., . . . Probert, C. S. (2018). Oral iron exacerbates colitis and influences the intestinal microbiome. PLOS ONE, 13(10). doi:10.1371/journal.pone.0202460DOI: 10.1371/journal.pone.0202460
Hicks, N., Liu, X., Gregory, R., Kenny, J., Lucaci, A., Lenzi, L., . . . Duncan, K. R. (2018). Temperature Driven Changes in Benthic Bacterial Diversity Influences Biogeochemical Cycling in Coastal Sediments. FRONTIERS IN MICROBIOLOGY, 9. doi:10.3389/fmicb.2018.01730DOI: 10.3389/fmicb.2018.01730
Gaither, M. R., Gkafas, G. A., de Jong, M., Sarigol, F., Neat, F., Regnier, T., . . . Hoelzel, A. R. (2018). Genomics of habitat choice and adaptive evolution in a deep-sea fish. NATURE ECOLOGY & EVOLUTION, 2(4), 680-687. doi:10.1038/s41559-018-0482-xDOI: 10.1038/s41559-018-0482-x
Lum, F. -M., Lee, D., Chua, T. -K., Tan, J. J. L., Lee, C. Y. P., Liu, X., . . . Ng, L. F. P. (2018). Zika Virus Infection Preferentially Counterbalances Human Peripheral Monocyte and/or NK Cell Activity. MSPHERE, 3(2), 18 pages. doi:10.1128/mSphereDirect.00120-18DOI: 10.1128/mSphereDirect.00120-18
Pascoal, S., Liu, X., Fang, Y., Paterson, S., Ritchie, M. G., Rockliffe, N., . . . Bailey, N. W. (2018). Increased socially mediated plasticity in gene expression accompanies rapid adaptive evolution. Ecology Letters, 21(4), 546-556. doi:10.1111/ele.12920DOI: 10.1111/ele.12920
2017
Carroll, M. W., Haldenby, S., Rickett, N. Y., Palyi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. MSPHERE, 2(04), 19 pages. doi:10.1128/mSphereDirect.00325-17DOI: 10.1128/mSphereDirect.00325-17
Carroll, M. W., Haldenby, S., Rickett, N. Y., Pályi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep sequencing of RNA from blood and oral swab samples reveals the presence of nucleic acid from a number of pathogens in patients with acute Ebola virus disease and is consistent with bacterial translocation across the gut. mSphere, 2(4). doi:10.1128/mSphereDirect.00325-17DOI: 10.1128/mSphereDirect.00325-17
Liu, X., Speranza, E., Muñoz-Fontela, C., Haldenby, S., Rickett, N., Garcia-Dorival, I., . . . Hiscox, J. (2017). Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus. Genome Biology, 18. doi:10.1186/s13059-016-1137-3DOI: 10.1186/s13059-016-1137-3
2016
Obaid, A. Y., Sabir, J. S. M., Atef, A., Liu, X., Edris, S., El-Domyati, F. M., . . . Jansen, R. K. (2016). Analysis of transcriptional response to heat stress in Rhazya stricta. BMC PLANT BIOLOGY, 16. doi:10.1186/s12870-016-0938-6DOI: 10.1186/s12870-016-0938-6
A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium <i>Myxococcus xanthus</i> (Journal article)
Wielgoss, S., Didelot, X., Chaudhuri, R. R., Liu, X., Weedall, G. D., Velicer, G. J., & Vos, M. (2016). A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium <i>Myxococcus xanthus</i>. ISME JOURNAL, 10(10), 2468-2477. doi:10.1038/ismej.2016.34DOI: 10.1038/ismej.2016.34
Gomez, P., Paterson, S., De Meester, L., Liu, X., Lenzi, L., Sharma, M. D., . . . Buckling, A. (2016). Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community. Nature Communications, 7. doi:10.1038/ncomms12453DOI: 10.1038/ncomms12453
Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression (Journal article)
Pascoal, S., Liu, X., Ly, T., Fang, Y., Rockliffe, N., Paterson, S., . . . Bailey, N. W. (2016). Rapid evolution and gene expression: a rapidly evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression. JOURNAL OF EVOLUTIONARY BIOLOGY, 29(6), 1234-1246. doi:10.1111/jeb.12865DOI: 10.1111/jeb.12865
Copper toxicosis in non-<i>COMMD1</i> Bedlington terriers is associated with metal transport gene <i>ABCA12</i> (Journal article)
Haywood, S., Boursnell, M., Loughran, M. J., Trafford, J., Isherwood, D., Liu, X., . . . Carter, S. D. (2016). Copper toxicosis in non-<i>COMMD1</i> Bedlington terriers is associated with metal transport gene <i>ABCA12</i>. JOURNAL OF TRACE ELEMENTS IN MEDICINE AND BIOLOGY, 35, 83-89. doi:10.1016/j.jtemb.2016.01.015DOI: 10.1016/j.jtemb.2016.01.015
Liu, L. -N., Faulkner, M., Liu, X., Huang, F., Darby, A. C., & Hall, N. (2016). Revised Genome Sequence of the Purple Photosynthetic Bacterium <i>Blastochloris viridis</i>. GENOME ANNOUNCEMENTS, 4(1). doi:10.1128/genomeA.01520-15DOI: 10.1128/genomeA.01520-15
2015
Veses-Garcia, M., Liu, X., Rigden, D. J., Kenny, J. G., McCarthy, A. J., & Allison, H. E. (2015). Transcriptomic Analysis of Shiga-Toxigenic Bacteriophage Carriage Reveals a Profound Regulatory Effect on Acid Resistance in Escherichia coli. Applied and Environmental Microbiology, 81(23), 8118-8125. doi:10.1128/AEM.02034-15DOI: 10.1128/AEM.02034-15
2014
Speeding up systems biology simulations of biochemical pathways using condor (Journal article)
Liu, X., Taylor, S. J. E., Mustafee, N., Wang, J., Gao, Q., & Gilbert, D. (2014). Speeding up systems biology simulations of biochemical pathways using condor. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 26(17), 2727-2742. doi:10.1002/cpe.3161DOI: 10.1002/cpe.3161
Peffers, M. J., Liu, X., & Clegg, P. D. (2014). Transcriptomic profiling of cartilage ageing.. Genomics data, 2, 27-28. doi:10.1016/j.gdata.2014.03.001DOI: 10.1016/j.gdata.2014.03.001
2013
Transcriptomic signatures in cartilage ageing (Journal article)
Peffers, M. J., Liu, X., & Clegg, P. D. (2013). Transcriptomic signatures in cartilage ageing. ARTHRITIS RESEARCH & THERAPY, 15(4). doi:10.1186/ar4278DOI: 10.1186/ar4278
TRANSCRIPTOME-WIDE EXPRESSION VARIATION ASSOCIATED WITH ENVIRONMENTAL PLASTICITY AND MATING SUCCESS IN CACTOPHILIC <i>DROSOPHILA MOJAVENSIS</i> (Journal article)
Smith, G., Fang, Y., Liu, X., Kenny, J., Cossins, A. R., de Oliveira, C. C., . . . Ritchie, M. G. (2013). TRANSCRIPTOME-WIDE EXPRESSION VARIATION ASSOCIATED WITH ENVIRONMENTAL PLASTICITY AND MATING SUCCESS IN CACTOPHILIC <i>DROSOPHILA MOJAVENSIS</i>. EVOLUTION, 67(7), 1950-1963. doi:10.1111/evo.12082DOI: 10.1111/evo.12082
Transcriptomic signatures in cartilage ageing (Journal article)
Peffers, M., Liu, X., & Clegg, P. (2013). Transcriptomic signatures in cartilage ageing. Arthritis Research & Therapy, 15(4), R98. doi:10.1186/ar4278DOI: 10.1186/ar4278
2012
From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula (Journal article)
AlSaadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A. I., Liu, X., Lenzi, L., . . . Day, I. N. M. (2012). From a Single Whole Exome Read to Notions of Clinical Screening: Primary Ciliary Dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. ANNALS OF HUMAN GENETICS, 76, 211-220. doi:10.1111/j.1469-1809.2012.00704.xDOI: 10.1111/j.1469-1809.2012.00704.x
From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula (Journal article)
Alsaadi, M. M., Gaunt, T. R., Boustred, C. R., Guthrie, P. A., Liu, X., Lenzi, L., . . . Day, I. N. (2012). From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula. Annals of Human Genetics, 76(3), 211-220.