2024
Charras, A., Hofmann, S. R., Cox, A., Schulze, F., Russ, S., Northey, S., . . . Hedrich, C. M. (2024). P2RX7 gene variants associate with altered inflammasome assembly and reduced pyroptosis in chronic nonbacterial osteomyelitis (CNO).. Journal of autoimmunity, 144, 103183. doi:10.1016/j.jaut.2024.103183DOI: 10.1016/j.jaut.2024.103183
Zendri, F., Schmidt, V., Mauder, N., Loeffler, A., Jepson, R. E., Isgren, C., . . . Timofte, D. (2024). Corrigendum: Rapid typing of <i>Klebsiella pneumoniae</i> and <i>Pseudomonas aeruginosa</i> by Fourier-transform Infrared spectroscopy informs infection control in veterinary settings.. Frontiers in microbiology, 15, 1396367. doi:10.3389/fmicb.2024.1396367DOI: 10.3389/fmicb.2024.1396367
Zendri, F., Schmidt, V., Mauder, N., Loeffler, A., Jepson, R. E., Isgren, C., . . . Timofte, D. (2024). Rapid typing of <i>Klebsiella pneumoniae</i> and <i>Pseudomonas aeruginosa</i> by Fourier-transform Infrared spectroscopy informs infection control in veterinary settings.. Frontiers in microbiology, 15, 1334268. doi:10.3389/fmicb.2024.1334268DOI: 10.3389/fmicb.2024.1334268
2023
Hares, M. F., Griffiths, B. E., Johnson, F., Nelson, C., Haldenby, S., Stewart, C. J., . . . Coombes, J. L. (n.d.). Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis. Animal Microbiome, 5(1). doi:10.1186/s42523-023-00265-5DOI: 10.1186/s42523-023-00265-5
Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: A metagenomic analysis (Preprint)
DOI: 10.21203/rs.3.rs-2844476/v1
Quinn, L. M., Haldenby, S., Antzcak, P., Fowler, A., Bullock, K., Kenny, J., . . . Goldring, C. (n.d.). Genomic profiling of idiopathic peri-hilar cholangiocarcinoma reveals new targets and mutational pathways. Scientific Reports, 13(1). doi:10.1038/s41598-023-33096-0DOI: 10.1038/s41598-023-33096-0
Cotton, S., McHugh, M. P., Dewar, R., Haas, J. G., Templeton, K., & COVID-19 Genomics UK (COG-UK) Consortium. (2023). Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes.. The Journal of hospital infection, 135, 28-36. doi:10.1016/j.jhin.2023.02.010DOI: 10.1016/j.jhin.2023.02.010
Charras, A., Haldenby, S., Smith, E. M. D., Egbivwie, N., Olohan, L., Kenny, J. G., . . . Hedrich, C. M. (2023). Panel sequencing links rare, likely damaging gene variants with distinct clinical phenotypes and outcomes in juvenile-onset SLE. RHEUMATOLOGY, 62(SI2), SI210-SI225. doi:10.1093/rheumatology/keac275DOI: 10.1093/rheumatology/keac275
Bay, V., Gillespie, A., Ganda, E., Evans, N. J., Carter, S. D., Lenzi, L., . . . Oikonomou, G. (n.d.). The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions. Microbiome, 11(1). doi:10.1186/s40168-022-01440-7DOI: 10.1186/s40168-022-01440-7
2022
Willett, B. J., Grove, J., MacLean, O. A., Wilkie, C., De Lorenzo, G., Furnon, W., . . . Thomson, E. C. (2022). SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway (vol 7, pg 1161, 2022). NATURE MICROBIOLOGY, 7(10), 1709. doi:10.1038/s41564-022-01241-6DOI: 10.1038/s41564-022-01241-6
Stirrup, O., Blackstone, J., Mapp, F., MacNeil, A., Panca, M., Holmes, A., . . . Breuer, J. (2022). Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study. ELIFE, 11. doi:10.7554/eLife.78427DOI: 10.7554/eLife.78427
Wilkinson, S. A. J., Richter, A., Casey, A., Osman, H., Mirza, J. D., Stockton, J., . . . Loman, N. J. (2022). Recurrent SARS-CoV-2 mutations in immunodeficient patients.. Virus evolution, 8(2), veac050. doi:10.1093/ve/veac050DOI: 10.1093/ve/veac050
Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., . . . Gupta, R. K. (2022). Author Correction: SARS-CoV-2 evolution during treatment of chronic infection.. Nature, 608(7922), E23. doi:10.1038/s41586-022-05104-2DOI: 10.1038/s41586-022-05104-2
Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., . . . Gupta, R. K. (2022). Author Correction: Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies.. Nature, 608(7922), E24. doi:10.1038/s41586-022-05103-3DOI: 10.1038/s41586-022-05103-3
678 Damaging variants in P2X7R associate with Chronic Nonbacterial Osteomyelitis (CNO) (Conference Paper)
Charras, A., Hofmann, S. R., Cox, A., Schulze, F., Russ, S., Hartmann, H., . . . Hedrich, C. M. (2022). 678 Damaging variants in P2X7R associate with Chronic Nonbacterial Osteomyelitis (CNO). In British Society for Rheumatology. BMJ Publishing Group Ltd and Royal College of Paediatrics and Child Health. doi:10.1136/archdischild-2022-rcpch.421DOI: 10.1136/archdischild-2022-rcpch.421
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Eales, O., Page, A. J., de Oliveira Martins, L., Wang, H., Bodinier, B., Haw, D., . . . Elliott, P. (2022). SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2. BMC Infectious Diseases, 22(1). doi:10.1186/s12879-022-07628-4DOI: 10.1186/s12879-022-07628-4
Nickbakhsh, S., Hughes, J., Christofidis, N., Griffiths, E., Shaaban, S., Enright, J., . . . Smith-Palmer, A. (2022). Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. Scientific Reports, 12(1). doi:10.1038/s41598-022-15661-1DOI: 10.1038/s41598-022-15661-1
Klaser, K., Molteni, E., Graham, M., Canas, L. S., Osterdahl, M. F., Antonelli, M., . . . Duncan, E. L. (2022). COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study. SCIENTIFIC REPORTS, 12(1). doi:10.1038/s41598-022-14016-0DOI: 10.1038/s41598-022-14016-0
Vöhringer, H. S., Sanderson, T., Sinnott, M., De Maio, N., Nguyen, T., Goater, R., . . . Gerstung, M. (2022). Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England.. Nature, 606(7915), E18. doi:10.1038/s41586-022-04887-8DOI: 10.1038/s41586-022-04887-8
Ashford, F., Best, A., Dunn, S. J., Ahmed, Z., Siddiqui, H., Melville, J., . . . McNally, A. (2022). SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time.. Journal of clinical microbiology, 60(4), e0240821. doi:10.1128/jcm.02408-21DOI: 10.1128/jcm.02408-21
The bovine foot skin microbiota is associated with host genotype and the development of infectious digital dermatitis lesions (Preprint)
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Aggarwal, D., Page, A. J., Schaefer, U., Savva, G. M., Myers, R., Volz, E., . . . Harrison, E. M. (2022). Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. NATURE COMMUNICATIONS, 13(1). doi:10.1038/s41467-022-28371-zDOI: 10.1038/s41467-022-28371-z
Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study (Preprint)
DOI: 10.1101/2022.02.10.22270799
Snell, L. B., Wang, W., Alcolea-Medina, A., Charalampous, T., Batra, R., de Jongh, L., . . . Curcin, V. (2022). Descriptive comparison of admission characteristics between pandemic waves and multivariable analysis of the association of the Alpha variant (B.1.1.7 lineage) of SARS-CoV-2 with disease severity in inner London.. BMJ open, 12(2), e055474. doi:10.1136/bmjopen-2021-055474DOI: 10.1136/bmjopen-2021-055474
Aggarwal, D., Warne, B., Jahun, A. S., Hamilton, W. L., Fieldman, T., du Plessis, L., . . . Consor, C. G. U. K. C. O. G. -U. K. (2022). Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. NATURE COMMUNICATIONS, 13(1). doi:10.1038/s41467-021-27942-wDOI: 10.1038/s41467-021-27942-w
2021
Elliott, P., Haw, D., Wang, H., Eales, O., Walters, C. E., Ainslie, K. E. C., . . . Riley, S. (2021). Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant. SCIENCE, 374(6574), 1463-+. doi:10.1126/science.abl9551DOI: 10.1126/science.abl9551
Vöhringer, H. S., Sanderson, T., Sinnott, M., De Maio, N., Nguyen, T., Goater, R., . . . Gerstung, M. (2021). Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature, 600(7889), 506-511. doi:10.1038/s41586-021-04069-yDOI: 10.1038/s41586-021-04069-y
de, S. T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., . . . Dong, T. (2021). The impact of viral mutations on recognition by SARS-CoV-2 specific T cells. ISCIENCE, 24(11). doi:10.1016/j.isci.2021.103353DOI: 10.1016/j.isci.2021.103353
Twohig, K. A., Nyberg, T., Zaidi, A., Thelwall, S., Sinnathamby, M. A., Aliabadi, S., . . . COVID-19 Genomics UK (COG-UK) consortium. (2021). Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study.. The Lancet. Infectious diseases, 22(1), 35-42. doi:10.1016/s1473-3099(21)00475-8DOI: 10.1016/s1473-3099(21)00475-8
Jackson, B., Boni, M. F., Bull, M. J., Colleran, A., Colquhoun, R. M., Darby, A. C., . . . Rambaut, A. (2021). Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic. Cell. doi:10.1016/j.cell.2021.08.014DOI: 10.1016/j.cell.2021.08.014
Royden, A., Christley, R., Jones, T., Williams, A., Awad, F., Haldenby, S., . . . Williams, N. J. (2021). Campylobacter Contamination at Retail of Halal Chicken Produced in the United Kingdom. JOURNAL OF FOOD PROTECTION, 84(8), 1433-1445. doi:10.4315/JFP-20-428DOI: 10.4315/JFP-20-428
The Bovine Foot Skin Microbiota is Associated with Host Genotype and the Development of Infectious Digital Dermatitis Lesions (Preprint)
DOI: 10.21203/rs.3.rs-650860/v1
Meng, B., Kemp, S. A., Papa, G., Datir, R., Ferreira, I. A. T. M., Marelli, S., . . . Gupta, R. K. (2021). Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7. CELL REPORTS, 35(13). doi:10.1016/j.celrep.2021.109292DOI: 10.1016/j.celrep.2021.109292
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (Journal article)
Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., . . . Ferguson, N. M. (2021). Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England. NATURE, 593(7858), 266-+. doi:10.1038/s41586-021-03470-xDOI: 10.1038/s41586-021-03470-x
Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies (Journal article)
Collier, D. A., De Marco, A., Ferreira, I. A. T. M., Meng, B., Datir, R. P., Walls, A. C., . . . Gupta, R. K. (2021). Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies. NATURE, 593(7857), 136-+. doi:10.1038/s41586-021-03412-7DOI: 10.1038/s41586-021-03412-7
Graham, M. S., Sudre, C. H., May, A., Antonelli, M., Murray, B., Varsaysky, T., . . . Ourselin, S. (2021). Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study. LANCET PUBLIC HEALTH, 6(5), E335-E345. doi:10.1016/S2468-2667(21)00055-4DOI: 10.1016/S2468-2667(21)00055-4
Kemp, S. A., Collier, D. A., Datir, R. P., Ferreira, I. A. T. M., Gayed, S., Jahun, A., . . . Gupta, R. K. (2021). SARS-CoV-2 evolution during treatment of chronic infection. NATURE, 592(7853), 277-+. doi:10.1038/s41586-021-03291-yDOI: 10.1038/s41586-021-03291-y
Radford, A. D., Singleton, D. A., Jewell, C., Appleton, C., Rowlingson, B., Hale, A. C., . . . Pinchbeck, G. L. (2021). Outbreak of Severe Vomiting in Dogs Associated with a Canine Enteric Coronavirus, United Kingdom. EMERGING INFECTIOUS DISEASES, 27(2), 517-528. doi:10.3201/eid2702.202452DOI: 10.3201/eid2702.202452
Volz, E., Hill, V., McCrone, J. T., Price, A., Jorgensen, D., O'Toole, Á., . . . Connor, T. R. (2021). Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.. Cell, 184(1), 64-75.e11. doi:10.1016/j.cell.2020.11.020DOI: 10.1016/j.cell.2020.11.020
Huson, K. M., Atcheson, E., Oliver, N. A. M., Best, P., Barley, J. P., Hanna, R. E. B., . . . Robinson, M. W. (2021). Transcriptome and Secretome Analysis of Intra-Mammalian Life-Stages of Calicophoron daubneyi Reveals Adaptation to a Unique Host Environment.. Molecular & cellular proteomics : MCP, 20, 100055. doi:10.1074/mcp.ra120.002175DOI: 10.1074/mcp.ra120.002175
2020
Huson, K. M., Atcheson, E., Oliver, N. A. M., Best, P., Barley, J. P., Hanna, R. E. B., . . . Robinson, M. W. (n.d.). Transcriptome and secretome analysis of intra-mammalian life-stages of the emerging helminth pathogen, Calicophoron daubneyi reveals adaptation to a unique host environment.. Molecular & Cellular Proteomics, mcp.RA120.002175. doi:10.1074/mcp.ra120.002175DOI: 10.1074/mcp.ra120.002175
Moore, S. C., Penrice-Randal, R., Alruwaili, M., Randle, N., Armstrong, S., Hartley, C., . . . Hiscox, J. A. (2020). Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism. VIRUSES-BASEL, 12(10). doi:10.3390/v12101164DOI: 10.3390/v12101164
Alm, E., Broberg, E. K., Connor, T., Hodcroft, E. B., Komissarov, A. B., Maurer-Stroh, S., . . . Pereyaslov, D. (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. EUROSURVEILLANCE, 25(32), 7-14. doi:10.2807/1560-7917.ES.2020.25.32.2001410DOI: 10.2807/1560-7917.ES.2020.25.32.2001410
Thornton, S., Coupland, S. E., Olohan, L., Sibbring, J. S., Kenny, J. G., Hertz-Fowler, C., . . . Kalirai, H. (2020). Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12(4). doi:10.3390/cancers12041039DOI: 10.3390/cancers12041039
Haldenby, S., Bronowski, C., Nelson, C., Kenny, J., Martinez-Rodriguez, C., Chaudhuri, R., . . . Winstanley, C. (2020). Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLOS ONE, 15(01). doi:10.1371/journal.pone.0227535DOI: 10.1371/journal.pone.0227535
2019
Trimester-specific Zika virus infection affects placental responses in women (Preprint)
DOI: 10.1101/727081
CD4 T-CELL HLA-U PSEUDOGENE AT BASELINE PREDICTS CLINICAL REMISSION TO ANTI-TNF AGENTS IN ULCERATIVE COLITIS (Conference Paper)
Subramanian, S., Rainbow, L., Gemmell, M., Fang, Y., Haldenby, S., Hough, R., & Probert, C. (2019). CD4 T-CELL HLA-U PSEUDOGENE AT BASELINE PREDICTS CLINICAL REMISSION TO ANTI-TNF AGENTS IN ULCERATIVE COLITIS. In GUT Vol. 68 (pp. A64-A65). doi:10.1136/gutjnl-2019-BSGAbstracts.127DOI: 10.1136/gutjnl-2019-BSGAbstracts.127
CD4 T-cell transcriptome analysis at baseline predicts clinical remission to anti-TNF agents in ulcerative colitis (UC) (Conference Paper)
Subramanian, S., Rainbow, L., Gemmell, M., Hough, R., Haldenby, S., Gureviciute, A., . . . Probert, C. (2019). CD4 T-cell transcriptome analysis at baseline predicts clinical remission to anti-TNF agents in ulcerative colitis (UC). In JOURNAL OF CROHNS & COLITIS Vol. 13 (pp. S132-S133). doi:10.1093/ecco-jcc/jjy222.217DOI: 10.1093/ecco-jcc/jjy222.217
Lum, F. -M., Narang, V., Hue, S., Chen, J., McGovern, N., Rajarethinam, R., . . . Ng, L. F. P. (n.d.). Immunological observations and transcriptomic analysis of trimester-specific full-term placentas from three Zika virus-infected women. Clinical and Translational Immunology, 8(11). doi:10.1002/cti2.1082DOI: 10.1002/cti2.1082
2018
Burgess, S. T. G., Bartley, K., Nunn, F., Wright, H. W., Hughes, M., Gemmell, M., . . . Nisbet, A. J. (2018). Draft Genome Assembly of the Poultry Red Mite, <i>Dermanyssus gallinae</i>. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 7(18). doi:10.1128/MRA.01221-18DOI: 10.1128/MRA.01221-18
Burgess, S. T. G., Bartley, K., Marr, E. J., Wright, H. W., Weaver, R. J., Prickett, J. C., . . . Nisbet, A. J. (2018). Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis.. Genome announcements, 6(16). doi:10.1128/genomeA.00265-18DOI: 10.1128/genomeA.00265-18
Gaither, M. R., Gkafas, G. A., de Jong, M., Sarigol, F., Neat, F., Regnier, T., . . . Hoelzel, A. R. (2018). Genomics of habitat choice and adaptive evolution in a deep-sea fish. NATURE ECOLOGY & EVOLUTION, 2(4), 680-687. doi:10.1038/s41559-018-0482-xDOI: 10.1038/s41559-018-0482-x
Williams, D., Fothergill, J. L., Evans, B., Caples, J., Haldenby, S., Walshaw, M. J., . . . Paterson, S. (2018). Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strain. MICROBIAL GENOMICS, 4(3). doi:10.1099/mgen.0.000167DOI: 10.1099/mgen.0.000167
2017
Carroll, M. W., Haldenby, S., Rickett, N. Y., Palyi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut. MSPHERE, 2(04), 19 pages. doi:10.1128/mSphereDirect.00325-17DOI: 10.1128/mSphereDirect.00325-17
Carroll, M. W., Haldenby, S., Rickett, N. Y., Pályi, B., Garcia-Dorival, I., Liu, X., . . . Hiscox, J. A. (2017). Deep sequencing of RNA from blood and oral swab samples reveals the presence of nucleic acid from a number of pathogens in patients with acute Ebola virus disease and is consistent with bacterial translocation across the gut. mSphere, 2(4). doi:10.1128/mSphereDirect.00325-17DOI: 10.1128/mSphereDirect.00325-17
Wardle, R., Pullman, J. A., Haldenby, S., Ressel, L., Pope, M., Clegg, P. D., . . . Peffers, M. J. (2017). Identification of Equid herpesvirus 2 in tissue-engineered equine tendon.. Wellcome open research, 2, 60. doi:10.12688/wellcomeopenres.12176.2DOI: 10.12688/wellcomeopenres.12176.2
Ransom-Jones, E., McCarthy, A. J., Haldenby, S., Doonan, J., & McDonald, J. E. (2017). Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity. mSphere, 2(4). doi:10.1128/mSphere.00300-17DOI: 10.1128/mSphere.00300-17
Jones, N., Millman, C., van der Es, M., Hukelova, M., Forbes, K., Glover, C., . . . Lake, I. (2017). Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality. Applied and Environmental Microbiology, 83(14). doi:10.1128/AEM.00162-17DOI: 10.1128/AEM.00162-17
Wardell, K., Haldenby, S., Jones, N., Liddell, S., Ngo, G. H. P., & Allers, T. (2017). RadB acts in homologous recombination in the archaeon <i>Haloferax volcanii</i>, consistent with a role as recombination mediator. DNA REPAIR, 55, 7-16. doi:10.1016/j.dnarep.2017.04.005DOI: 10.1016/j.dnarep.2017.04.005
D'Amore, R., Johnson, J., Haldenby, S., Hall, N., Hughes, M., Joynson, R., . . . Hall, A. (2017). SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63(1), 13-20. doi:10.2144/000114565DOI: 10.2144/000114565
Genome-Wide Association Study of Nevirapine Hypersensitivity in a sub-Saharan African HIV-infected Population (Journal article)
Carr, D. F., Bourgeois, S., Chaponda, M., Takeshita, L., Morris, A., Cornejo Castro, E. M., . . . Pirmohamed, M. (2017). Genome-Wide Association Study of Nevirapine Hypersensitivity in a sub-Saharan African HIV-infected Population. Journal of Antimicrobial Chemotherapy, 72(4), 1152-1162. doi:10.1093/jac/dkw545DOI: 10.1093/jac/dkw545
Liu, X., Speranza, E., Muñoz-Fontela, C., Haldenby, S., Rickett, N., Garcia-Dorival, I., . . . Hiscox, J. (2017). Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus. Genome Biology, 18. doi:10.1186/s13059-016-1137-3DOI: 10.1186/s13059-016-1137-3
2016
King, K. C., Brockhurst, M. A., Vasieva, O., Paterson, S., Betts, A., Ford, S. A., . . . Hurst, G. D. D. (2016). Rapid evolution of microbe-mediated protection against pathogens in a worm host. ISME Journal, 10, 1915-1924. doi:10.1038/ismej.2015.259DOI: 10.1038/ismej.2015.259
Davies, E. V., James, C. E., Williams, D., O'Brien, S., Fothergill, J. L., Haldenby, S., . . . Brockhurst, M. A. (2016). Temperate phages both mediate and drive adaptive evolution in pathogen biofilms. Proceedings of the National Academy of Sciences of the United States of America, 113(29), 8266-8271. doi:10.1073/pnas.1520056113DOI: 10.1073/pnas.1520056113
2015
Divergent, Coexisting Pseudomonas aeruginosa Lineages in Chronic Cystic Fibrosis Lung Infections (Journal article)
Williams, D., Evans, B., Haldenby, S., Walshaw, M. J., Brockhurst, M. A., Winstanley, C., & Paterson, S. (2015). Divergent, Coexisting Pseudomonas aeruginosa Lineages in Chronic Cystic Fibrosis Lung Infections. American Journal of Respiratory and Critical Care Medicine, 191(7), 775-785. doi:10.1164/rccm.201409-1646OCDOI: 10.1164/rccm.201409-1646OC
Williams, D., Evans, B., Haldenby, S., Walshaw, M. J., Brockhurst, M. A., Winstanley, C., & Paterson, S. (2015). Divergent, CoexistingPseudomonas aeruginosaLineages in Chronic Cystic Fibrosis Lung Infections. American Journal of Respiratory and Critical Care Medicine, 191(7), 775-785. doi:10.1164/rccm.201409-1646OCDOI: 10.1164/rccm.201409-1646OC
2014
WS21.4 Use of genome sequencing to study population diversification and transmission of a Pseudomonas aeruginosa epidemic strain (Journal article)
Winstanley, C., Williams, D., Fothergill, J. L., Evans, B., Haldenby, S., Loman, N., . . . Paterson, S. (2014). WS21.4 Use of genome sequencing to study population diversification and transmission of a Pseudomonas aeruginosa epidemic strain. Journal of Cystic Fibrosis, 13, S41. doi:10.1016/s1569-1993(14)60129-6DOI: 10.1016/s1569-1993(14)60129-6
NOTCH1 Mutations Occur Early during Cutaneous Squamous Cell Carcinogenesis. (Journal article)
South, A. P., Purdie, K. J., Watt, S. A., Haldenby, S., den Breems, N. Y., Dimon, M., . . . Leigh, I. M. (2014). NOTCH1 Mutations Occur Early during Cutaneous Squamous Cell Carcinogenesis.. J Invest Dermatol.
Temperate phage accelerate adaptation of Pseudomonas aeruginosa in a biofilm model (Journal article)
James, C. E., Davies, E. V., Haldenby, S., Paterson, S., Winstanley, C., & Brockhurst, M. A. (2014). Temperate phage accelerate adaptation of Pseudomonas aeruginosa in a biofilm model.
2010
The complete genome sequence of Haloferax volcanii DS2, a model archaeon. (Journal article)
Hartman, A. L., Norais, C., Badger, J. H., Delmas, S., Haldenby, S., Madupu, R., . . . Eisen, J. A. (2010). The complete genome sequence of Haloferax volcanii DS2, a model archaeon.. PLoS One.
2009
RecA family proteins in archaea: RadA and its cousins. (Journal article)
Haldenby, S., White, M. F., & Allers, T. (2009). RecA family proteins in archaea: RadA and its cousins.. Biochem Soc Trans..
2007
Genetic Analysis of RadB, a Paralogue of the Archaeal Rad51/RecA Homologue, RadA (Thesis / Dissertation)
Haldenby, S. (2007). Genetic Analysis of RadB, a Paralogue of the Archaeal Rad51/RecA Homologue, RadA. (PhD Thesis, University of Nottingham).
2006
Interactions of RadB, a DNA repair protein in archaea, with DNA and ATP. (Journal article)
Guy, C. P., Haldenby, S., Brindley, A., Walsh, D. A., Briggs, G. S., Warren, M. J., . . . Bolt, E. L. (2006). Interactions of RadB, a DNA repair protein in archaea, with DNA and ATP.. J Mol Biol..
Undated
