Research outputs
Selected research outputs
- Biofilms vs. cities and humans vs. aliens-a tale of reproducibility in biofilms (Journal article - 2021)
- Interlaboratory study for the evaluation of three microtiter plate-based biofilm quantification methods (Journal article - 2021)
- Minimum information guideline for spectrophotometric and fluorometric methods to assess biofilm formation in microplates. (Journal article - 2020)
- Prevalence and Influence of Fungal Biofilm in Wound Infections (Chapter - 2025)
2025
Investigating the Prevalence of Fungi in Diabetic Ulcers: An Under-Recognised Contributor to Polymicrobial Biofilms
Allkja, J., Bakri, A., Short, B., Gilmour, A., Brown, J. L., Bal, A. M., . . . Ramage, G. (2025). Investigating the Prevalence of Fungi in Diabetic Ulcers: An Under-Recognised Contributor to Polymicrobial Biofilms. APMIS, 133(4). doi:10.1111/apm.70025
Prevalence and Influence of Fungal Biofilm in Wound Infections
Allkja, J., Short, B., Bilal, Z., Brown, J. L., Williams, C., & Ramage, G. (2025). Prevalence and Influence of Fungal Biofilm in Wound Infections. In Springer Series on Biofilms (pp. 133-164). Springer Nature Switzerland. doi:10.1007/978-3-031-93315-8_6
2024
Biomaterials with antifungal strategies to fight oral infections
Allkja, J., Roudbary, M., Alves, A. M. V., Cernakova, L., & Rodrigues, C. F. (2024). Biomaterials with antifungal strategies to fight oral infections. CRITICAL REVIEWS IN BIOTECHNOLOGY, 44(6), 1151-1163. doi:10.1080/07388551.2023.2236784
2023
In Vitro, In Vivo, and Ex Vivo Models to Study Mixed Bacterial and Fungal Biofilms
Azevedo, A. S., Alljka, J., Kumar, S., Kumar, A., Brás, S., & Rodrigues, C. F. (2023). In Vitro, In Vivo, and Ex Vivo Models to Study Mixed Bacterial and Fungal Biofilms. In Springer Series on Biofilms (pp. 79-124). Springer International Publishing. doi:10.1007/978-3-031-15349-5_3
Interactions of microorganisms within a urinary catheter polymicrobial biofilm model
Allkja, J., Goeres, D. M., Azevedo, A. S., & Azevedo, N. F. (2023). Interactions of microorganisms within a urinary catheter polymicrobial biofilm model. BIOTECHNOLOGY AND BIOENGINEERING, 120(1), 239-249. doi:10.1002/bit.28241
Methods for the Visualization of Multispecies Biofilms
Rodrigues, C. F., Allkja, J., Mendes, L., & Azevedo, A. S. (2023). Methods for the Visualization of Multispecies Biofilms. In Springer Series on Biofilms (pp. 35-78). Springer International Publishing. doi:10.1007/978-3-031-15349-5_2
2021
Biofilms vs. cities and humans vs. aliens-a tale of reproducibility in biofilms
Azevedo, N. F., Allkja, J., & Goeres, D. M. (2021). Biofilms vs. cities and humans vs. aliens-a tale of reproducibility in biofilms. TRENDS IN MICROBIOLOGY, 29(12), 1062-1071. doi:10.1016/j.tim.2021.05.003
Interlaboratory study for the evaluation of three microtiter plate-based biofilm quantification methods
Allkja, J., van Charante, F., Aizawa, J., Reigada, I., Guarch-Perez, C., Vazquez-Rodriguez, J. A., . . . Goeres, D. M. (2021). Interlaboratory study for the evaluation of three microtiter plate-based biofilm quantification methods. SCIENTIFIC REPORTS, 11(1). doi:10.1038/s41598-021-93115-w
Characterization of Social Interactions and Spatial Arrangement of Individual Bacteria in MultiStrain or Multispecies Biofilm Systems Using Nucleic Acid Mimics-Fluorescence In Situ Hybridization
Allkja, J., & Azevedo, A. S. (2021). Characterization of Social Interactions and Spatial Arrangement of Individual Bacteria in MultiStrain or Multispecies Biofilm Systems Using Nucleic Acid Mimics-Fluorescence In Situ Hybridization. In FLUORESCENCE IN SITU HYBRIDIZATION (FISH) FOR MICROBIAL CELLS (Vol. 2246, pp. 97-109). doi:10.1007/978-1-0716-1115-9_7
2020
Minimum information guideline for spectrophotometric and fluorometric methods to assess biofilm formation in microplates.
Allkja, J., Bjarnsholt, T., Coenye, T., Cos, P., Fallarero, A., Harrison, J. J., . . . Azevedo, N. F. (2020). Minimum information guideline for spectrophotometric and fluorometric methods to assess biofilm formation in microplates.. Biofilm, 2, 100010. doi:10.1016/j.bioflm.2019.100010