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2025

Leveraging Large Language Models for Automated Export Control Screening: Evaluating LLMs Framework

Alotaibi, S., Lisitsa, A., McCabe, A., & MacSween, J. (2025). Leveraging Large Language Models for Automated Export Control Screening: Evaluating LLMs Framework. In Annals of Computer Science and Information Systems Vol. 43 (pp. 441-449). Polish Information Processing Society. doi:10.15439/2025f2314

DOI: 10.15439/2025f2314
: Conference Paper

2024

Allele Frequency Net Database.

Gonzalez-Galarza, F. F., McCabe, A., Melo Dos Santos, E. J., Ghattaoraya, G., Jones, A. R., & Middleton, D. (2024). Allele Frequency Net Database.. In Unknown Book (Vol. 2809, pp. 19-36). doi:10.1007/978-1-0716-3874-3_2

DOI: 10.1007/978-1-0716-3874-3_2
: Chapter

2021

A snapshot of human leukocyte antigen (HLA) diversity using data from the Allele Frequency Net Database

Gonzalez-Galarza, F. F., McCabe, A., dos Santos, E. J. M., Jones, A. R., & Middleton, D. (2021). A snapshot of human leukocyte antigen (HLA) diversity using data from the Allele Frequency Net Database. HUMAN IMMUNOLOGY, 82(7), 496-504. doi:10.1016/j.humimm.2020.10.004

DOI: 10.1016/j.humimm.2020.10.004
: Journal article

lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry

McCabe, A., & Jones, A. R. (2021). lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry. Journal of Proteome Research, 20(4), 1981-1985. doi:10.1021/acs.jproteome.0c00618

DOI: 10.1021/acs.jproteome.0c00618
: Journal article

A Proteome-Wide Immunoinformatics Tool to Accelerate T-Cell Epitope Discovery and Vaccine Design in the Context of Emerging Infectious Diseases: An Ethnicity-Oriented Approach

Oyarzun, P., Kashyap, M., Fica, V., Salas-Burgos, A., Gonzalez-Galarza, F. F., McCabe, A., . . . Kobe, B. (2021). A Proteome-Wide Immunoinformatics Tool to Accelerate T-Cell Epitope Discovery and Vaccine Design in the Context of Emerging Infectious Diseases: An Ethnicity-Oriented Approach. FRONTIERS IN IMMUNOLOGY, 12. doi:10.3389/fimmu.2021.598778

DOI: 10.3389/fimmu.2021.598778
: Journal article

2020

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools

Gonzalez-Galarza, F. F., McCabe, A., Santos, E. J. M. D., Jones, J., Takeshita, L., Ortega-Rivera, N. D., . . . Jones, A. R. (2019). Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Research. doi:10.1093/nar/gkz1029

DOI: 10.1093/nar/gkz1029
: Journal article

2018

Allele Frequency Net Database

Gonzalez-Galarza, F. F., McCabe, A., Melo dos Santos, E. J., Takeshita, L., Ghattaoraya, G., Jones, A. R., & Middleton, D. (2018). Allele Frequency Net Database. In HLA TYPING: METHODS AND PROTOCOLS (Vol. 1802, pp. 49-62). doi:10.1007/978-1-4939-8546-3_4

DOI: 10.1007/978-1-4939-8546-3_4
: Chapter

2017

Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for Immunogenetics

Sanchez-Mazas, A., Nunes, J. M., Middleton, D., Sauter, J., Buhler, S., McCabe, A., . . . Fleischhauer, K. (2017). Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for Immunogenetics. HLA, 89(2), 104-113. doi:10.1111/tan.12956

DOI: 10.1111/tan.12956
: Journal article

Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data.

Peffers, M., Jones, A. R., McCabe, A., & Anderson, J. (2017). Neopeptide Analyser: A software tool for neopeptide discovery in proteomics data.. Wellcome open research, 2, 24. doi:10.12688/wellcomeopenres.11275.1

DOI: 10.12688/wellcomeopenres.11275.1
: Journal article

2016

A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.

Ghattaoraya, G. S., Dundar, Y., González-Galarza, F. F., Maia, M. H. T., Santos, E. J. M., da Silva, A. L. S., . . . Jones, A. R. (2016). A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.. Database : the journal of biological databases and curation, 2016, baw069. doi:10.1093/database/baw069

DOI: 10.1093/database/baw069
: Journal article

Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data

Melos dos Santos, E. J., McCabe, A., Gonzalez-Galarza, F. F., Jones, A. R., & Middleton, D. (2016). Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data. HUMAN IMMUNOLOGY, 77(3), 238-248. doi:10.1016/j.humimm.2015.11.013

DOI: 10.1016/j.humimm.2015.11.013
: Journal article

COMMON AND WELL-DOCUMENTED (CWD) HLA ALLELES IN EUROPE: A CATALOGUE CHARACTERISED BY REGIONAL VARIATION

Sanchez-Mazas, A., Nunes, J. M., Buhler, S., Andreani, M., Grubic, Z., Middleton, D., . . . Fleischhauer, K. (2016). COMMON AND WELL-DOCUMENTED (CWD) HLA ALLELES IN EUROPE: A CATALOGUE CHARACTERISED BY REGIONAL VARIATION. In HLA Vol. 87 (pp. 230). Retrieved from https://www.webofscience.com/

: Conference Paper

2013

Shortest Paths with Bundles and Non-additive Weights Is Hard

Goldberg, P. W., & McCabe, A. (2013). Shortest Paths with Bundles and Non-additive Weights Is Hard. In Unknown Conference (pp. 264-275). Springer Berlin Heidelberg. doi:10.1007/978-3-642-38233-8_22

DOI: 10.1007/978-3-642-38233-8_22
: Conference Paper

2012

Commodity Auctions and Frugality Ratios

Goldberg, P. W., & McCabe, A. (2012). Commodity Auctions and Frugality Ratios. In Unknown Conference (pp. 180-191). Springer Berlin Heidelberg. doi:10.1007/978-3-642-33996-7_16

DOI: 10.1007/978-3-642-33996-7_16
: Conference Paper