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MRC DiMeN Doctoral Training Partnership: Metabolic Reprogramming of the Cholangiocarcinoma Immune Microenvironment Using Mitochondrial Uncouplers as Metabolic Adjuvants for CAR-T/NK Cell Therapies

Funding
Funded
Study mode
Full-time
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Subject area
Biological and Biomedical Sciences

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Overview

Cholangiocarcinoma, or bile duct cancer, is one of the most challenging cancers to treat, with fewer than 10% of patients surviving five years after diagnosis. Its resistance to treatment stems from a highly immunosuppressive tumour microenvironment that disables immune cells, even advanced immunotherapies such as CAR-T and CAR-NK cells. These immune cells fail in the tumour’s nutrient-poor, oxygen-depleted conditions. To address this, new approaches are needed to re-energise immune cells and weaken tumour defences.

About this opportunity

This project explores a new direction in cancer therapy: manipulating metabolism to reshape the tumour microenvironment and enhance immune cell function within and outside the tumour environment. The focus is on mitochondrial uncouplers—agents that modulate energy production to alter cellular metabolism. Several of these, including niclosamide, are already licensed for other uses and have shown strong potential to influence immune and tumour cell activity. The project will assess how niclosamide can reprogramme the metabolic and functional aspects of both cancer and immune cells, improving the effectiveness of cell-based immunotherapies.

You will work at the intersection of immunology, metabolism, and cancer biology, using patient-derived 3D liver tumour models and precision-cut tumour slice cultures to recreate the tumour environment ex vivo. These systems will be used to test mitochondrial uncouplers alongside immune cell therapies to determine how metabolic reprogramming affects immune activity and tumour killing.

During the studentship, you will gain advanced training in a suite of immunological and analytical techniques to characterise how metabolic modulation influences immune–tumour interactions. This includes high-content flow cytometry to define immune-cell phenotypes, activation markers, and exhaustion states; multiplex cytokine and chemokine assays to map immune signalling; and ELISpot, intracellular cytokine staining, and cell cytotoxicity assays to assess T-cell and NK-cell function. You will also apply high-content imaging and metabolomic profiling to track changes in energy use, mitochondrial activity, and redox balance within tumour and immune cells. These methods will be combined with 3D co-culture models and patient-derived tissue systems to deliver physiologically relevant insights. Through this integrated approach, you will determine how mitochondrial uncouplers reshape immune metabolism, reverse tumour-induced suppression, and enhance cell therapies.

Benefits of being in the DiMeN DTP:

This project is part of the Discovery Medicine North Doctoral Training Partnership (DiMeN DTP), a diverse community of PhD students across the North of England researching the major health problems facing the world today. Our partner institutions (Universities of Leeds, Liverpool, Newcastle, York and Sheffield) are internationally recognised as centres of research excellence and can offer you access to state-of-the-art facilities to deliver high impact research.

We are very proud of our student-centred ethos and committed to supporting you throughout your PhD. As part of the DTP, we offer bespoke training in key skills sought after in early career researchers, as well as opportunities to broaden your career horizons in a range of non-academic sectors.

Being funded by the MRC means you can access additional funding for research placements, training opportunities or internships in science policy, science communication and beyond.

Further information on the programme and instructions on how to apply, including a link to the application portal, can be found on our website https://www.dimen.org.uk/

Further reading

1. An inter-laboratory comparison of an NLRP3 inflammasome activation assay and dendritic cell maturation assay using a nanostructured lipid carrier and a polymeric nanomedicine, as exemplars. Drug Deliv Transl Res. 2022 Sep;12(9):2225-2242 https://pubmed.ncbi.nlm.nih.gov/35838879/
2. Exposure of human immune cells, to the antiretrovirals efavirenz and lopinavir, leads to lower glucose uptake and altered bioenergetic cell profiles through interactions with SLC2A1. Biomed Pharmacother. 2022 Jun;150:112999. doi: 10.1016/j.biopha.2022.112999. Epub 2022 Apr 20. PMID: 35461087. https://pubmed.ncbi.nlm.nih.gov/35461087/
3. A Preclinical Model of Human Liver Using Precision Cut Tissue Slice Culture [v1]. F1000Research. 2025: 14: 571. https://pubmed.ncbi.nlm.nih.gov/40777732/
4. Developing a patient-derived model of cholangiocarcinoma using Precision Cut Tissue Slices (PCTS). EJSO. 2024: 20(2): 107758. https://www.hpbonline.org/article/S1365-182X(23)01644-1/fulltext
5. Immunological Drug-Drug Interactions Affect the Efficacy and Safety of Immune Checkpoint Inhibitor Therapies. Chem Res Toxicol. 2024 Jul 15;37(7):1086-1103. doi: 10.1021/acs.chemrestox.4c00067. Epub 2024 Jun 24. PMID: 38912648; PMCID: PMC11256900. https://pubmed.ncbi.nlm.nih.gov/38912648/
6. The importance of preclinical models in cholangiocarcinoma. Eur J Surg Oncol. 2025 Feb;51(2):108304. doi: 10.1016/j.ejso.2024.108304. Epub 2024 Mar 27. PMID: 38653585. https://pubmed.ncbi.nlm.nih.gov/38653585/
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Who is this for?

This project is ideal for applicants with a background in biomedical sciences, pharmacology, or immunology who wish to contribute to the development of next-generation immunotherapies and create new strategies for reprogramming the immune system to combat cancer. Please direct any questions to 

Applicants for postgraduate research study at Liverpool are normally expected to hold a UK first degree with a First Class or Upper Second Class degree classification, or a Second Class degree plus a Master’s degree. Equivalent international qualifications are also accepted, and their equivalence will be evaluated on the basis of the information provided by the European Network of Information Centres (ENIC) formerly NARIC as well as internal guidance based on our experience of a qualification’s suitability as a preparation for our programmes.

For applicants whose first language is not English, an IELTS score of 6.5 with no band score lower than 5.5, or an equivalent University of Liverpool acceptable English language qualification. For further details and other acceptable English language qualifications please see here: http://www.liv.ac.uk/study/international/countries/english-language/

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How to apply

  1. 1. Contact supervisors

    The student will join a dynamic, interdisciplinary team spanning pharmacology, immunology, and cancer biology. Based in the Immunocompatibility Group, you will also work with the Cholangiocarcinoma Biology Lab to develop tumour slice models and the Human Liver Research Facility for multi-omics and imaging analysis, with clinical input from consultant hepatobiliary surgeons. Industrial placements with BioGrad and Apconix will provide experience in GMP manufacturing and the non-clinical safety of advanced therapies.

    Regular supervision, clear milestones, and DiMeN cohort training will guide your development. You will present at conferences, publish your findings, and gain experience that bridges the gap between discovery science and clinical translation.

  2. 2. Prepare your application documents

    All applications are made via the application form accessed on the DiMeN website at www.dimen.org.uk/ Please read the full application guidance on the website before submitting an application.

  3. 3. Apply

    Finally, register and apply online. You'll receive an email acknowledgment once you've submitted your application. We'll be in touch with further details about what happens next.

    You should only follow this step if you’ve successfully completed the DiMeN application process

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Funding your PhD

Studentships are fully funded by the Medical Research Council (MRC) for 4yrs. Funding will cover tuition fees, stipend (£20,780 for 2024/25) and project costs. We have a very small number of funded studentships for exceptional international applicants. Please read additional guidance here: View Website

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Contact us

Have a question about this research opportunity or studying a PhD with us? Please get in touch with us, using the contact details below, and we’ll be happy to assist you.

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