Alphabetical Site Map: Use this for a forensic look at what we do. The closest thing we have to an index! Links now work as they should. Thanks LogHound



- A -
A Brian Cox view of proteomics
A degrading synthesis of proteome turnover research!
A new lipocalin, fully sequenced, from bank voles
A points system for peer review
A proteomics workbench?
A-Z of the CPR site
Absolute quantification by QconCAT
Accessing the MASCOT server at Liverpool
Acetone modifies peptides! Be careful if you're using acetone precipitation.
All of our STEM activities, in one place
Amy Campbell
Andrew Miller, MP, visits CPR
Another new paper on glycan characterisation from Eyers team
Asymetric equalisation with combinatorial beads
Avian Proteomics
- B -
Back at the VG&M! Summer Science Club!
BBSRC Veterinary Vaccinology Network, Birmingham, UK
Being a mass spec postdoc
Betes Noir
Biomarkers of ragwort poisoning in horses
Bottom up analysis of glycosidic bond stereochemistry
BSPR, Hinxton, Cambridge
Buffer Calculator
- C -
Can I have a copy of XXXXX software?
Can you measure the mass of my protein?
Can you perform protein sequencing de novo?
Canine MMP identification
Catarina Franco
Cauxin in big cat urine
CaZIP phosphorylation
Challenging the 'MHC' hypothesis
Chaperone networks in yeast
Characterising proteins in scent marks
Chromatographic separation at the protein level
Claire Eyers
Claire interviewed for Dundee alumni page
Cochrane review of McArdle disease
Complete de novo sequencing of a mouse lemur protein
Complexity of RelA phosphorylation
Connective tissue proteomics
Contact with urinary proteins stimulates countermarking in male mice
Copper toxicity in sheep
CPR Alumni
CPR engagement with STEM
CPR Hosting the BBSRC Veterinary Vaccinology Network
CPR mugs - a true collector's item
CPR on the BBC
CPR team wins prize at BiotechYES competition
Cross-species proteomics
- D -
Dani Vileigas
Darcin in the news
Darcin NMR structure lodged
Darcin paper is a ‘hidden’ jewel!
Darcin stimulates neurogenesis
Darcin three dimensional structure solved!
Datasets
Deborah Simpson
Deep discovery of novel phosphorylation sites
Derivatization for proteomics
Designer genes for mass spectrometry
Designing QconCATs for a mammalian pathway
Double standards in proteomics
Dynamic SILAC for global assessment of proteome turnover
Dynamic sperm labelling
- E -
EF2 kinase regulation
Enhanced ability in phosphosite localisation
Enzyme turnover and metabolic regulation
Even the smallest of hamsters have lipocalins in their urine.
Extending Progenesis to embrace SILAC and Hi3
- F -
Facilities
Failed as a THE correspondent
Familiarity breeds...?
February, 2011
First paper describing QconCAT
First paper on a systematic analysis of MUP expression
First paper on dynamic SILAC in intact animals
First paper on proteome turnover
FPGA acceleration of proteomics data processing
Freemason visit to CPR
Frequent questions
FTICR based quantification
FTICR resolution of similar mass proteins
- G -
Gallery
Gallery |
Gemma Hardman
Genetic programming for peptide 'flyability'
Genetics of individual MUP variation
Global cooling
Global proteome quantification: dreams or reality?
Grace Loxley
Graduation 2010
- H -
Hardware accelerated proteomics
How many proteins can you detect in a typical proteomics analysis?
How much will it cost?
HUPO, Sydney, Aus
- I -
Identification of an atypical male-specific MUP in mouse urine
iMAC for phosphorylation sites
Improving the quality of turnover measurement
Inbreeding and individual recognition
Inbreeding compromises competitor recognition
Individual recognition through MUPs
Installation of our Synapt G2
Installation of our Velos Orbitrap
Instrument logs
Intact mass proteomics
Involatile ownership signals in mouse scent marks
Ion mobility for glycan analysis
Ion mobility review
Iris Wagner
Is label-free quantification the way to go?
Isolation of N-terminal peptides
It is a truth, universally acknowledged, that a mouse in possession of darcin must be in want of a mate.
It is worth adding DMSO to the mobile phase?
It's that time again - thesis submission!
It’s all about the actors, darling!
- J -
James Anderson
Jos Harris
Judging at the Big Bang
Junk Mail and Spam
- K -
Kinases in spindle assembly
- L -
Label free approaches to glycan and glycoprotein analysis
Lauren Tomlinson
Leonard Daly
Limited proteolysis
Limited proteolysis of MUPs
Limited proteolysis of native proteins
Local Resources
Lupe wins a Biochemical Society Outreach grant
Lynn McLean
Lysine acetylation of histones
- M -
Major MRC funding for enabling technologies
Many MUPs expressed by wild mice
Mark Prescott
Mass spectrometry
Mass spectrometry identification of proteins
Mass spectrometry practicals in CPR
Matthias Vonderach
Maximillian Harris
McArdle disease
McArdle disease
McArdle disease Cochrane systematic review
McArdle disease treatments
Mechanisms of kin recognition
Metabolic labelling in proteomics
Metabolomics in canine hepatology
MHC in scent communication
MHC is not involved in individual recognition
MMP Zymography
MMP zymography
Move, Week 1
Move, Week 2
Move, Week 2, end
Move, Week 3
Move, Week 5
MS for identification of PTMs
MUP complexity and analytical challenges
MUP heterogeneity
MUP ligand binding
MUP molecular heterogeneity
MUP polymorphic variants
MUP polymorphism & ligand binding
MUP polymorphism in an island population of mice
MUP variation in lab mouse strains
MUP variation in mouse subspecies
MUPs advertise heterozyygosity and fitness
MUPs and competitive scent marking
MUPs and MHC in mate choice
MUPs bind volatiles and extend the duration of odour signals
MUPs can take up ligands from the environment
MUPs in an aboriginal mouse
MUPs in individual recognition
MUPs play multiple roles in mouse communication
Muscle proteomics
Muscle proteomics: anabolic agent effects
Myosin light chain kinase phosphorylation site
Myths about MUPs
- N -
Natalie Koch
New appointment and convergence of two groups
New BBSRC ALERT 14 grant
New BBSRC Grant to develop MS Imaging at Liverpool
New collaboration with Brazil
New insights into protein kinase A action
New instrumentation
New lab members
New laboratory space starting!
New members of the group
New paper on CSF proteomics in paediatric meningitis
New paper on glycan arrays from Eyers team
New PhD opportunities in cell signalling and proteomics
New Web Site
News |
News from 2005
News from 2006
News from 2007
News from 2008
News from 2009
Nextgen QconCATs - MEERCAT!
- O -
Occam's Razor
Of mice, mups and mass spectrometry
Of scripts, actors, costumes and prostheses
Of scripts, actors, costumes and prostheses
On mental arithmetic
On reviewing
Orbitrap
Other equipment
Outreach Blog |
Overview of McArdle disease
Oxidative stress and MUPs
- P -
Papers |
Parasite proteomics
Peptide map drawing tool
Peptide mapping tool
PFG Digestion protocol for in-solution digests
PFG Lab Opening
Pheromones and contextual information.
Philip Brownridge
Phosphorylation stoichiometry
Piled Higher and Deeper
Positional proteomics and MetAP-2 substrates
Postcard from HUPO
Poster of our work
Pre-eclampsia biomarkers
Presentations
Prevention of proteolysis
Professor Rob Beynon, FLSW!
Projects
Protease inhibitors
Proteasome proteolysis
Protein binding in chemical communication
Protein turnover in a vertebrate
Proteome dynamics
Proteome dynamics in a non-model species - the challenges!
Proteome dynamics review
Proteome plasticity in sperm competition
Proteome turnover: why is it not being studied?
Proteomics and animal disease
Proteomics and animal disease
Proteomics and genome annotation
Proteomics and protein moonlighting
Proteomics as a service
Proteomics of a marine organism
Proteomics of copper effects in Ronaldsay sheep
Proteomics of copper toxicity
Proteomics of dystrophic muscle
Proteomics of growing muscle
Proteomics of HGF/EGF signalling
Proteomics of myeloma line in protien free medium
Proteomics of myofibroblasts
Proteomics of ocular cancer secretomes reveal malignancy potential
Proteomics of oxidative stress in mice
Proteomics of tissue samples
Proteomics suppporting supramolecular studies
Proteomics to identify galectin binding partners
Proteomics: 1 Plate Tectonics: 0
Proteostasis of heat shock
PTM's by MS
- Q -
QconCAT compared to label-free for plasma proteins
QconCAT for equine acute phase proteins
QconCAT protocols defined
QconCATs for mastitis research
QconCATs in equine wound healing
Quantification of a metabolic pathway
Quantification of proteins in the human osteoarthritic secretome
Quantitative analysis of the yeast 'chaperome'
Quantitative proteomics in systems biology
- R -
Rats have MUPs too - but different!
Rebecca Pattison
Recent developments
Removal of journal titles
Replical: engineered protein for improved proteomics workflows
Research |
Research Facility |
Review of ion mobility MS for glycan sequencing
Review of M4 proteases
Review of rodent urinary lipocalins
Review of thermolysins
Richard Bennett
Rob now Chair of BBSRC Strategy Panel
Robert Beynon
Role of CDK18 in replication stress signalling and genome stability
Romeo, Romeo, 'whiff'-fore art thou, Romeo?
Rosie Maher
Royal Society Funding for Winstanley
- S -
Safe and collegiate working in CPR
Safety sheet, acetonitrile
Sam Ferries
Sample preflight checklist for LCMS
Sarah Smith
Scent exposure influences competitive behaviour in lab mice
Scent marks signal competitive ability
Scent of sensecence
Scent signals of status
Scent wars
Schistosome parasite QconCAT
Science Club at New Park Primary
Sean Duffy
Seminal vesicle protein evolution
Separation science
Sequential exoproteolysis is not valid as a structural probe
Sex pheromones are not aways attractive
Significance of animal scents in behaviour
Social status and mate choice
Soluble meprin alpha
Sometimes I despair
Speeding up proteomics with hardware computing solutions
Sperm proteomes, gone large
SRM data standards
Stable isotope labelling for identification
STEM day at Winstanley
Stephen wins poster prize
Strategies for dynamic SILAC
Structural comparison of central and peripheral mouse MUPs
Structure and asparagine deamidation
- T -
Tarui disease review
The avoidance of inbreeding
The BigCheese Blog
The biggest absolute quantification study ever! A tale of 100 QconCATs for nearly 2,000 proteins
The crates are back in town
The end of proteomics
The F factor! F for 'flyability'!
The joys of running a training course!
Themes
ToF meeting, Long Beach, CA
Tools for kinome research
Training
Treatment for McArdle disease
Two new ion mobility equipped QToF Instruments from Waters
- U -
Unblocking the sink
Unkind cuts - proteolysis and proteomics
Urinary lipocalins
Useful documents
Useful Links
Using ion mobility MS to understand drug:protein interactions
- V -
VG&M Summer Science Club
Victoria acting as judge in the Big Bang North West
Victoria Harman
Victoria judging the Big Bang NW 2015
Vitamin B6 and McArdle disease
- W -
Waters Users Meeting, Copenhagen, Denmark
What capabilities do you have?
What is QconCAT?
What is the best route to contact?
What is the lowest limit of detection you can attain?
What's in a name
Where to find us
Who |
Who are CPR?
Who's got the biggest workload? Analysis of chaperone abundance and workload
Whole animal protein turnover studies
Wild mice in Zurich!
Wild mice show much more MUP polymorphism than inbred lab mice
Winstanley College Interviews
Winstanley come to visit
Winstanley STEM day
- X -
- Y -
Yeast complex proteomics
- Z -