2024
Lu, L., Zhang, F., Brierley, L., Robertson, G., Chase-Topping, M., Lycett, S., & Woolhouse, M. (2024). Temporal Dynamics, Discovery, and Emergence of Human-Transmissible RNA Viruses.. Molecular biology and evolution, 41(1), msad272. doi:10.1093/molbev/msad272DOI: 10.1093/molbev/msad272
2023
Hufsky, F., Abecasis, A. B., Babaian, A., Beck, S., Brierley, L., Dellicour, S., . . . Marz, M. (2023). The International Virus Bioinformatics Meeting 2023.. Viruses, 15(10), 2031. doi:10.3390/v15102031DOI: 10.3390/v15102031
Hawkings, M. J., Vaselli, N. M., Charalampopoulos, D., Brierley, L., Elliot, A. J., Buchan, I., & Hungerford, D. (2023). A Systematic Review of the Prevalence of Persistent Gastrointestinal Symptoms and Incidence of New Gastrointestinal Illness after Acute SARS-CoV-2 Infection. Viruses, 15(8), 1625. doi:10.3390/v15081625DOI: 10.3390/v15081625
A systematic review of the prevalence of persistent gastrointestinal symptoms and incidence of new gastrointestinal illness after acute SARS-CoV-2 infection (Preprint)
DOI: 10.1101/2023.04.26.23289142
Poisot, T., Ouellet, M. -A., Mollentze, N., Farrell, M. J., Becker, D. J., Brierley, L., . . . Carlson, C. J. (2023). Network embedding unveils the hidden interactions in the mammalian virome. PATTERNS, 4(6). doi:10.1016/j.patter.2023.100738DOI: 10.1016/j.patter.2023.100738
2022
Farrell, M. J., Brierley, L., Willoughby, A., Yates, A., & Mideo, N. (2022). Past and future uses of text mining in ecology and evolution. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 289(1975). doi:10.1098/rspb.2021.2721DOI: 10.1098/rspb.2021.2721
Carlson, C. J., Gibb, R. J., Albery, G. F., Brierley, L., Connor, R. P., Dallas, T. A., . . . Seifert, S. N. (n.d.). The Global Virome in One Network (VIRION): an Atlas of Vertebrate-Virus Associations. mBio. doi:10.1128/mbio.02985-21DOI: 10.1128/mbio.02985-21
Brierley, L., Nanni, F., Polka, J. K., Dey, G., Palfy, M., Fraser, N., & Coates, J. A. (2022). Tracking changes between preprint posting and journal publication during a pandemic. PLOS BIOLOGY, 20(2). doi:10.1371/journal.pbio.3001285DOI: 10.1371/journal.pbio.3001285
Benchmarking the performance of six variant callers on synthetic and real ctDNA datasets (Conference Paper)
Maruzani, R., Fowler, A., & Brierley, L. (2022). Benchmarking the performance of six variant callers on synthetic and real ctDNA datasets. In HUMAN HEREDITY Vol. VOL. (pp. 16). Retrieved from https://www.webofscience.com/
Gibb, R., Albery, G. F., Mollentze, N., Eskew, E. A., Brierley, L., Ryan, S. J., . . . Carlson, C. J. (2022). Mammal virus diversity estimates are unstable due to accelerating discovery effort. BIOLOGY LETTERS, 18(1). doi:10.1098/rsbl.2021.0427DOI: 10.1098/rsbl.2021.0427
Selecting subsets of immune repertoire features improves prediction of coeliac disease status using machine learning (Conference Paper)
Kockelbergh, H., Shoukat, M. S., Evans, S. C., Brierley, L., Jorgensen, A. L., Green, P. L., . . . Fowler, A. (2022). Selecting subsets of immune repertoire features improves prediction of coeliac disease status using machine learning. In HUMAN HEREDITY Vol. VOL. (pp. 14-15). Retrieved from https://www.webofscience.com/
2021
Albery, G. F., Becker, D. J., Brierley, L., Brook, C. E., Christofferson, R. C., Cohen, L. E., . . . Carlson, C. J. (2021). The science of the host–virus network. Nature Microbiology, 6(12), 1483-1492. doi:10.1038/s41564-021-00999-5DOI: 10.1038/s41564-021-00999-5
Gibb, R., Albery, G. F., Becker, D. J., Brierley, L., Connor, R., Dallas, T. A., . . . Poisot, T. (2021). Data Proliferation, Reconciliation and Synthesis in Viral Ecology. BIOSCIENCE, 71(11), 1148-1156. doi:10.1093/biosci/biab080DOI: 10.1093/biosci/biab080
Metelmann, S., Pattni, K., Brierley, L., Cavalerie, L., Caminade, C., Blagrove, M. S. C., . . . Baylis, M. (2021). Impact of climatic, demographic and disease control factors on the transmission dynamics of COVID-19 in large cities worldwide.. One Health, 100221. doi:10.1016/j.onehlt.2021.100221DOI: 10.1016/j.onehlt.2021.100221
Brierley, L., & Fowler, A. (2021). Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning. PLoS Pathogens, 17(4). doi:10.1371/journal.ppat.1009149DOI: 10.1371/journal.ppat.1009149
Fraser, N., Brierley, L., Dey, G., Polka, J. K., Palfy, M., Nanni, F., & Coates, J. A. (2021). The evolving role of preprints in the dissemination of COVID-19 research and their impact on the science communication landscape. PLOS BIOLOGY, 19(4). doi:10.1371/journal.pbio.3000959DOI: 10.1371/journal.pbio.3000959
Brierley, L. (2021). Lessons from the influx of preprints during the early COVID-19 pandemic. LANCET PLANETARY HEALTH, 5(3), E115-E117. Retrieved from https://www.webofscience.com/
Brierley, L., Nanni, F., Polka, J., Dey, G., Pálfy, M., Fraser, N., & Coates, J. A. (2021). Preprints in motion: tracking changes between preprint posting and journal publication during a pandemic. doi:10.1101/2021.02.20.432090DOI: 10.1101/2021.02.20.432090
2020
Zhang, F., Chase-Topping, M., Guo, C. -G., van Bunnik, B. A. D., Brierley, L., & Woolhouse, M. E. J. (2020). Global discovery of human-infective RNA viruses: A modelling analysis. PLOS PATHOGENS, 16(11). doi:10.1371/journal.ppat.1009079DOI: 10.1371/journal.ppat.1009079
Brierley, L., & Fowler, A. (2020). Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning. doi:10.1101/2020.11.02.350439DOI: 10.1101/2020.11.02.350439
Metelmann, S., Pattni, K., Brierley, L., Cavalerie, L., Caminade, C., Blagrove, M., . . . Baylis, M. (2020). Impact of climatic, demographic and disease control factors on the transmission dynamics of COVID-19 in large cities worldwide. doi:10.1101/2020.07.17.20155226DOI: 10.1101/2020.07.17.20155226
Fraser, N., Brierley, L., Dey, G., Polka, J., Pálfy, M., Nanni, F., & Coates, J. A. (2020). Preprinting the COVID-19 pandemic. doi:10.1101/2020.05.22.111294DOI: 10.1101/2020.05.22.111294
2019
Evolutionary origins of epidemic potential among human RNA viruses (Journal article)
Lu, L., Brierley, L., Robertson, G., Zhang, F., Lycett, S., Smith, D., . . . Woolhouse, M. (2019). Evolutionary origins of epidemic potential among human RNA viruses. doi:10.1101/771394DOI: 10.1101/771394
The effect of dapagliflozin on glycaemic control and other cardiovascular disease risk factors in type 2 diabetes mellitus: a real-world observational study (Journal article)
McGurnaghan, S. J., Brierley, L., Caparrotta, T. M., McKeigue, P. M., Blackbourn, L. A. K., Wild, S. H., . . . Colhoun, H. M. (2019). The effect of dapagliflozin on glycaemic control and other cardiovascular disease risk factors in type 2 diabetes mellitus: a real-world observational study. DIABETOLOGIA, 62(4), 621-632. doi:10.1007/s00125-018-4806-9DOI: 10.1007/s00125-018-4806-9
Tissue Tropism and Transmission Ecology Predict Virulence of Human RNA Viruses (Preprint)
DOI: 10.1101/581512
Brierley, L., Pedersen, A. B., & Woolhouse, M. E. J. (2019). Tissue tropism and transmission ecology predict virulence of human RNA viruses. PLOS BIOLOGY, 17(11). doi:10.1371/journal.pbio.3000206DOI: 10.1371/journal.pbio.3000206
2018
Epidemiological characteristics of human-infective RNA viruses (Journal article)
Woolhouse, M. E. J., & Brierley, L. (2018). Epidemiological characteristics of human-infective RNA viruses. SCIENTIFIC DATA, 5. doi:10.1038/sdata.2018.17DOI: 10.1038/sdata.2018.17
2016
Assessing the Epidemic Potential of RNA and DNA Viruses (Journal article)
Woolhouse, M. E. J., Brierley, L., McCaffery, C., & Lycett, S. (2016). Assessing the Epidemic Potential of RNA and DNA Viruses. EMERGING INFECTIOUS DISEASES, 22(12), 2037-2044. doi:10.3201/eid2212.160123DOI: 10.3201/eid2212.160123
Quantifying Global Drivers of Zoonotic Bat Viruses: A Process-Based Perspective (Journal article)
Brierley, L., Vonhof, M. J., Olival, K. J., Daszak, P., & Jones, K. E. (2016). Quantifying Global Drivers of Zoonotic Bat Viruses: A Process-Based Perspective. AMERICAN NATURALIST, 187(2), E53-E64. doi:10.1086/684391DOI: 10.1086/684391
2013
RNA Viruses: A Case Study of the Biology of Emerging Infectious Diseases. (Journal article)
J Woolhouse, M. E., Adair, K., & Brierley, L. (2013). RNA Viruses: A Case Study of the Biology of Emerging Infectious Diseases.. Microbiology spectrum, 1(1). doi:10.1128/microbiolspec.oh-0001-2012DOI: 10.1128/microbiolspec.oh-0001-2012