Module Specification

The information contained in this module specification was correct at the time of publication but may be subject to change, either during the session because of unforeseen circumstances, or following review of the module at the end of the session. Queries about the module should be directed to the member of staff with responsibility for the module.
Title Advanced Biotechnology
Code LIFE327
Coordinator Prof AJ McCarthy
Functional and Comparative Genomics
Aj55m@liverpool.ac.uk
Year CATS Level Semester CATS Value
Session 2016-17 Level 6 FHEQ First Semester 15

Pre-requisites before taking this module (other modules and/or general educational/academic requirements):

LIFE210 None 

Modules for which this module is a pre-requisite:

 

Co-requisite modules:

 

Linked Modules:

 

Teaching Schedule

  Lectures Seminars Tutorials Lab Practicals Fieldwork Placement Other TOTAL
Study Hours 22
This refers to approximately 2 timetabled lectures per week
        12
This refers to workshops to discuss industrial aspects of biotechnology
34
Timetable (if known)              
Private Study 116
TOTAL HOURS 150

Assessment

EXAM Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Unseen Written Exam  3 hours  80  Yes  Standard UoL penalty applies  Exam 
CONTINUOUS Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Coursework  2000 words  20  Yes  Standard UoL penalty applies  Report Notes (applying to all assessments) Assessment 327 will be a written examination. Assessment 327.1 will be a written report and an oral presentation. 

Aims

  • To describe current approaches to exploit microorganisms and microbial processes in the context of modern developments in biotechnology

  • To evaluate economic and ethical aspects of the development of novel products and the potential environmental benefits of using biotechnological processes

  • To explain b iotechnological processes, such as antibiotic production, plant biomass conversion and microbial informatics biofuels

  • To develop in students the ability to critically evaluate and interpret this knowledge and understanding, and to apply this to solve complex problems in microbial biotechnology

  • Learning Outcomes

    To describe in detail particular biotechnological applications with emphasis on the underlying scientific principles

    To critically discuss approaches to strain improvement and manipulation, including the impact of recombinant DNA technology on the biotechnology industry

    To appraise the emerging importance of genomics, with reference to the development of new therapeutics, diagnostics and vaccines

    To explain how microorganisms and their enzymes can compete with chemical processes for environmental and renewable energy applications


    Teaching and Learning Strategies

    Lecture - This refers to approximately 2 timetabled lectures per week

    Workshop - This refers to workshops to discuss industrial aspects of biotechnology


    Syllabus

    Students will receive presentations on advanced topics accompanied by references to appropriate current primary and secondary sources which they are expected to follow-up in their own time.

     

    Economics. The promise of biotechnology and development of the sector to date.  Market sectors and characteristics.  Project analysis.  Case studies of large and medium size companies.  Possible keys to success.

     

    Ethics and RegulationDefinition. Perspectives of different interest groups, including government, entrepreneurs, ethicists, ''the public''. Philosophy of moral behaviour. Patenting of biological entities. Regulation of GM work. The public attitude to biotechnology and its significance.

     

    Microbial Genomics.  Limitation of conventional approach to development of new therapeutics, diagnostics and vaccines. The use of genomics and associated technologies (proteomics, transcriptomics, structural genomics) as an alternative. Limitations of the new approaches.

     

    The Human Microbiome Project. Where Next? Recent reports suggest that modulating the human gut microbiome may affect aspects of h uman pathology as diverse as obesity and mental illness. In this workshop session student groups will role-play stakeholders (entrepreneurs, regulators, etc) in exploring possible commercial and ethical dimensions to future developments in this area.

     

    Gene cloning in StreptomycesThe molecular biology of Streptomycetes – genetics and genomics. On e of the largest bacterial genomes, encoding secondary metabolism responsible for differentiation and a diversity of biochemical pathways that are the foundation of the antibiotic industry. The development of protoplast transformation and plasmid/phage cloning vectors.

     

    Strain improvement for antibiotic productionAntibiotic synthesis pathways are usually the re sult of coordinated expression of a large number of genes. Consequently, traditional strain improvement programmes have relied on random mutation and selection coupled with control of culture conditions to produce antibiotic yields that are commercially viable.

     

    Recombinant DNA technology and antibiotic productionAntibiotic synthesis, resistance and associated r egulatory genes occur in clusters, and this can be exploited in the genetic manipulation of antibiotic production.  The strategies range from simple shotgun cloning approaches through mutational cloning and the modification of multienzyme complexes to synthesize entirely novel compounds.

     

    Biotechnology and energyThe potential role of biomass conversion and prosp ects for economic viability as part of the global strategy to reduce our dependence on fossil fuels.

    Substrates and hydrolysisFrom waste to energy crops and the importance of complete conversion (biomass refining).  Comparisons between bioconversion and chemical and physical approaches, including pretreatments.

     

    ProcessesWhole cell processes – SCP, upgrading animal fodder, biopulping and solid state fermentation. Cell free processes – the use of extracellular hydrolytic and oxidative enzymes to generate sugars and high value chemicals from plant biomass. From traditional processes – the production of dextrose and fructose syrups from starch, to more innovative applications in the paper and textile industries focussed on modification and/or degradation of cellulose and hemicellulose.

     

    Fuels.  Principally bioethanol production as currently practised in Brazil and the U.S. Microbiological and recombinant DNA technology developments that could lead to more widespread adoption of this alternative to petroleum fuels.

     

    Bioremediation. Catastrophic pollution events or industrial contamination causes environmental damage that can be reversed by harnessing the metabolic capabilities of microorganisms.


    Recommended Texts

    Reading lists are managed at readinglists.liverpool.ac.uk. Click here to access the reading lists for this module.
    Explanation of Reading List: