Research outputs
2026
Estimating COVID-19 incidence and prevalence using lateral flow tests in England and Scotland, 2023-2024
Fyles, M., Mellor, J., Paton, R. S., Overton, C. E., Phillips, A. M., Glaser, A., & Ward, T. (2026). Estimating COVID-19 incidence and prevalence using lateral flow tests in England and Scotland, 2023-2024. Nature Communications, 17(1). doi:10.1038/s41467-025-67272-9
2025
CLN7 protein functions at the interface between endolysosomes and stress granules to promote cell survival
Sharaireh, A., Guevara-Ferrer, M., Ludlaim, A. M., Humphries, J. D., Phillips, A. M., Dowsey, A. W., . . . McKay, T. R. (2025). CLN7 protein functions at the interface between endolysosomes and stress granules to promote cell survival. Cell Death & Disease, 16(1). doi:10.1038/s41419-025-08063-4
Probabilistic modelling to account for uncertainty in portable energy dispersive X-ray diffraction measurements
Mawdsley, B., Dorkings, S., Maskell, S., Pickup, D., Chong, S., Farrell, T., & Phillips, A. (2025). Probabilistic modelling to account for uncertainty in portable energy dispersive X-ray diffraction measurements. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 1075, 170430. doi:10.1016/j.nima.2025.170430
SARS-CoV-2 test sensitivity and duration of positivity in the UK during the 2023/2024 Winter: A prospective cohort study based on self-reported data
Overton, C. E., Fyles, M., Mellor, J., Paton, R. S., Phillips, A. M., Glaser, A., . . . Ward, T. (2025). SARS-CoV-2 test sensitivity and duration of positivity in the UK during the 2023/2024 Winter: A prospective cohort study based on self-reported data. JOURNAL OF INFECTION, 90(6). doi:10.1016/j.jinf.2025.106485
A Massively Parallel SMC Sampler for Decision Trees
Drousiotis, E., Varsi, A., Phillips, A. M., Maskell, S., & Spirakis, P. G. (2025). A Massively Parallel SMC Sampler for Decision Trees. Algorithms, 18(1), 14. doi:10.3390/a18010014
2024
Assessing the Impact of SARS-CoV-2 on Influenza-Like Illness Surveillance Trends in the Community during the 2023/2024 Winter in England.
Mellor, J., Fyles, M., Paton, R. S., Phillips, A., Overton, C. E., & Ward, T. (2024). Assessing the Impact of SARS-CoV-2 on Influenza-Like Illness Surveillance Trends in the Community during the 2023/2024 Winter in England.. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 107307. doi:10.1016/j.ijid.2024.107307
The Incidence and Prevalence of SARS-CoV-2 in the UK Population from the UKHSA Winter COVID Infection Study
Epidemiological Parameters of SARS-CoV-2 in the UK during the 2023/2024 Winter: A Cohort Study
Target tracking in a complex simulated world
Griffith, E. J., Phillips, A. M., Mai, L., Maskell, S., & Ralph, J. F. (2024). Target tracking in a complex simulated world. In Proceedings of SPIE the International Society for Optical Engineering Vol. 13200. doi:10.1117/12.3031696
2023
Five Inhibitory Receptors Display Distinct Vesicular Distributions in Murine T Cells
Lu, J., Veler, A., Simonetti, B., Raj, T., Chou, P. H., Cross, S. J., . . . Wulfing, C. (2023). Five Inhibitory Receptors Display Distinct Vesicular Distributions in Murine T Cells. CELLS, 12(21). doi:10.3390/cells12212558
Bayesian Decision Trees Inspired from Evolutionary Algorithms
Drousiotis, E., Phillips, A. M., Spirakis, P. G., & Maskell, S. (2023). Bayesian Decision Trees Inspired from Evolutionary Algorithms. In Unknown Conference (pp. 318-331). Springer International Publishing. doi:10.1007/978-3-031-44505-7_22
Five inhibitory receptors display distinct vesicular distributions in T cells.
Uncertainty-Aware Protein-Level Quantification and Differential Expression Analysis of Proteomics Data with seaMass
Phillips, A. M., Unwin, R. D., Hubbard, S. J., & Dowsey, A. W. (2023). Uncertainty-Aware Protein-Level Quantification and Differential Expression Analysis of Proteomics Data with seaMass. In Methods in Molecular Biology (Vol. 2426, pp. 141-162). doi:10.1007/978-1-0716-1967-4_8
2022
Cold atom inertial sensors for navigation applications
Wright, M. J., Anastassiou, L., Mishra, C., Davies, J. M., Phillips, A. M., Maskell, S., & Ralph, J. F. (2022). Cold atom inertial sensors for navigation applications. Frontiers in Physics, 10. doi:10.3389/fphy.2022.994459
The INSR/AKT/mTOR pathway regulates the pace of myogenesis in a syndecan-3-dependent manner
Jones, F. K., Phillips, A. M., Jones, A. R., & Pisconti, A. (2022). The INSR/AKT/mTOR pathway regulates the pace of myogenesis in a syndecan-3-dependent manner. MATRIX BIOLOGY, 113, 61-82. doi:10.1016/j.matbio.2022.09.004
Position fixing with cold atom gravity gradiometers
Phillips, A. M., Wright, M. J., Riou, I., Maddox, S., Maskell, S., & Ralph, J. F. (2022). Position fixing with cold atom gravity gradiometers. AVS QUANTUM SCIENCE, 4(2). doi:10.1116/5.0095677
Mast cell infiltration of the choroid and protease release are early events in age-related macular degeneration associated with genetic risk at both chromosomes 1q32 and 10q26
Mcharg, S., Booth, L., Perveen, R., Garcia, I. R., Brace, N., Bayatti, N., . . . Bishop, P. N. (2022). Mast cell infiltration of the choroid and protease release are early events in age-related macular degeneration associated with genetic risk at both chromosomes 1q32 and 10q26. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(20). doi:10.1073/pnas.2118510119
CLN7 mutation causes aberrant redistribution of protein isoforms and contributes to Batten disease pathobiology
2020
Augmented inertial navigation using cold atom sensing
Phillips, A. M., Wright, M. J., Kiss-Toth, M., Read, I., Riou, I., Maddox, S., . . . Ralph, J. F. (2020). Augmented inertial navigation using cold atom sensing. In Cold Atoms for Quantum Technologies. SPIE. doi:10.1117/12.2583999
SDC3 acts as a timekeeper of myogenic differentiation by regulating the insulin/AKT/mTOR axis in muscle stem cell progeny
Bayesian methods for protein quantification in mass spectrometry proteomics
Phillips, A. (2020). Bayesian methods for protein quantification in mass spectrometry proteomics.
2019
Regional protein expression in human Alzheimer's brain correlates with disease severity.
Xu, J., Patassini, S., Rustogi, N., Riba-Garcia, I., Hale, B. D., Phillips, A. M., . . . Unwin, R. D. (2019). Regional protein expression in human Alzheimer's brain correlates with disease severity. COMMUNICATIONS BIOLOGY, 2. doi:10.1038/s42003-018-0254-9
Cognitive dysfunction in diabetic rats is prevented by pyridoxamine treatment. A multidisciplinary investigation
Kassab, S., Begley, P., Church, S. J., Rotariu, S. M., Chevalier-Riffard, C., Dowsey, A. W., . . . Gardiner, N. J. (2019). Cognitive dysfunction in diabetic rats is prevented by pyridoxamine treatment. A multidisciplinary investigation. MOLECULAR METABOLISM, 28, 107-119. doi:10.1016/j.molmet.2019.08.003
2018
Regional protein expression in human Alzheimer’s brain correlates with disease severity
2017
Chapter 7: Algorithms for MS1-Based Quantitation
Liao, H., Phillips, A., Jankevics, A., & Dowsey, A. W. (2017). Chapter 7: Algorithms for MS1-Based Quantitation. In New Developments in Mass Spectrometry (Vol. 2017-January, pp. 135-154). doi:10.1039/9781782626732-00133
2016
Chapter 7 Algorithms for MS1-Based Quantitation
Liao, H., Phillips, A., Jankevics, A., & Dowsey, A. W. (2016). Chapter 7 Algorithms for MS1-Based Quantitation. In Proteome Informatics (pp. 133-154). Royal Society of Chemistry (RSC). doi:10.1039/9781782626732-00133