Photo of Dr Linda D'Amore

Dr Linda D'Amore PhD

Post Doctoral Fellow Functional and Comparative Genomics

Publications

Selected Publications

  1. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling (Journal article - 2016)
  2. Analysis of the bread wheat genome using whole-genome shotgun sequencing (Journal article - 2012)
  3. Novel Hydroxycinnamoyl-Coenzyme A Quinate Transferase Genes from Artichoke Are Involved in the Synthesis of Chlorogenic Acid (Journal article - 2010)
  4. SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms (Journal article - 2017)
  5. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform (Journal article - 2015)

2017

Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use (Journal article)

parsons, B. N., Ijaz, U. Z., D'Amore, R., Burkitt, M. D., Eccles, R., Lenzi, L., . . . Pritchard, D. M. (2017). Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use. PLoS Pathogens. doi:10.1101/144907

DOI: 10.1101/144907

Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use (Journal article)

Parsons, B. N., Ijaz, U. Z., D'Amore, R., Burkitt, M. D., Eccles, R., Lenzi, L., . . . Pritchard, D. M. (2017). Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13(11). doi:10.1371/journal.ppat.1006653

DOI: 10.1371/journal.ppat.1006653

Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus (Journal article)

Craig, T., Holland, R., D'Amore, R., Johnson, J. R., McCue, H. V., West, A., . . . Caddick, M. (2017). Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus. ACS SYNTHETIC BIOLOGY, 6(12), 2273-2280. doi:10.1021/acssynbio.7b00212

DOI: 10.1021/acssynbio.7b00212

SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms (Journal article)

D'Amore, R., Johnson, J., Haldenby, S., Hall, N., Hughes, M., Joynson, R., . . . Hall, A. (2017). SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63(1), 13-20. doi:10.2144/000114565

DOI: 10.2144/000114565

2016

GeneMill: A 21st century platform for innovation (Journal article)

Johnson, J. R., D'Amore, R., Thain, S. C., Craig, T., Mccue, H. V., Hertz-Fowler, C., . . . Hall, A. J. W. (2016). GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44, 681-683. doi:10.1042/BST20160012

DOI: 10.1042/BST20160012

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling (Journal article)

D'Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., . . . Hall, N. (2016). A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC GENOMICS, 17. doi:10.1186/s12864-015-2194-9

DOI: 10.1186/s12864-015-2194-9

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data (Journal article)

Schirmer, M., D'Amore, R., Ijaz, U. Z., Hall, N., & Quince, C. (2016). Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. BMC BIOINFORMATICS, 17. doi:10.1186/s12859-016-0976-y

DOI: 10.1186/s12859-016-0976-y

2015

Stable-isotope probing and metagenomics reveal predation by protozoa drives E-coli removal in slow sand filters (Journal article)

Haig, S. -J., Schirmer, M., D'Amore, R., Gibbs, J., Davies, R. L., Collins, G., & Quince, C. (2015). Stable-isotope probing and metagenomics reveal predation by protozoa drives E-coli removal in slow sand filters. ISME JOURNAL, 9(4), 797-808. doi:10.1038/ismej.2014.175

DOI: 10.1038/ismej.2014.175

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform (Journal article)

Schirmer, M., Ijaz, U. Z., D'Amore, R., Hall, N., Sloan, W. T., & Quince, C. (2015). Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. NUCLEIC ACIDS RESEARCH, 43(6). doi:10.1093/nar/gku1341

DOI: 10.1093/nar/gku1341

Draft Genome Sequence of Bacillus Species from the Rhizosphere of the Desert Plant Rhazya stricta. (Journal article)

Abo-Aba, S. E. M., Sabir, J. S. M., Baeshen, M. N., Sabir, M. J., Mutwakil, M. H. Z., Baeshen, N. A., . . . Hall, N. (2015). Draft Genome Sequence of Bacillus Species from the Rhizosphere of the Desert Plant Rhazya stricta.. Genome announcements, 3(6). doi:10.1128/genomeA.00957-15

DOI: 10.1128/genomeA.00957-15

2012

Analysis of the bread wheat genome using whole-genome shotgun sequencing (Journal article)

Brenchley, R., Spannagl, M., Pfeifer, M., Barker, G. L. A., D’Amore, R., Allen, A. M., . . . Hall, N. (2012). Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 491(7426), 705-710. doi:10.1038/nature11650

DOI: 10.1038/nature11650

Targeted re-sequencing of the allohexaploid wheat exome (Journal article)

Winfield, M. O., Wilkinson, P. A., Allen, A. M., Barker, G. L. A., Coghill, J. A., Burridge, A., . . . Edwards, K. J. (2012). Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnology Journal, 10(6), 733-742. doi:10.1111/j.1467-7652.2012.00713.x

DOI: 10.1111/j.1467-7652.2012.00713.x

2011

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis (Journal article)

Ashelford, K., Eriksson, M. E., Allen, C. M., D'Amore, R., Johansson, M., Gould, P., . . . Hall, A. (2011). Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis. GENOME BIOLOGY, 12(3). doi:10.1186/gb-2011-12-3-r28

DOI: 10.1186/gb-2011-12-3-r28

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.) (Journal article)

Allen, A. M., Barker, G. L. A., Berry, S. T., Coghill, J. A., Gwilliam, R., Kirby, S., . . . Edwards, K. J. (2011). Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnology Journal, 9(9), 1086-1099.

2010

Novel Hydroxycinnamoyl-Coenzyme A Quinate Transferase Genes from Artichoke Are Involved in the Synthesis of Chlorogenic Acid (Journal article)

Sonnante, G., Blanco, E., Pierri, C. L., De Palma, M., Luo, J., Tucci, M., . . . D'Amore, L. (2010). Novel Hydroxycinnamoyl-Coenzyme A Quinate Transferase Genes from Artichoke Are Involved in the Synthesis of Chlorogenic Acid. Plant Physiology, 153(3), 1224-21236.

2008

'Constitutive over-expression of two wheat pathogenesis-related genes enhances resistance of tobacco plants to Phytophthora nicotianae' (Journal article)

Fiocchetti, F., D'Amore, R., DePalma, M., Bestini, L., Caruso, C., Caporale, C., . . . Tucci, M. (2008). 'Constitutive over-expression of two wheat pathogenesis-related genes enhances resistance of tobacco plants to Phytophthora nicotianae'. Plant Cell, Tissue and Organ Culture, 92(1), 73-84.

2006

'Molecular and functional analysis of new members of the wheat PR4 gene family' (Journal article)

Bertini, L., Cascone, N., Tucci, M., D�Amore, R., Di Berardino, I., Buonocore, V., . . . Caruso, C. (2006). 'Molecular and functional analysis of new members of the wheat PR4 gene family'. Biological Chemestry, 387(8), 1101-1111.