Photo of Prof Christiane Hertz-Fowler

Prof Christiane Hertz-Fowler

Interim Head of Institute of Integrative Biology, Chair in Pathogen Genomics Functional and Comparative Genomics

    Publications

    2018

    FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes (Journal article)

    Basenko, E., Pulman, J., Shanmugasundram, A., Harb, O., Crouch, K., Starns, D., . . . Hertz-Fowler, C. (2018). FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. Journal of Fungi, 4(1), 39. doi:10.3390/jof4010039

    DOI: 10.3390/jof4010039

    2017

    A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations (Journal article)

    Ofon, E., Noyes, H., Mulindwa, J., Ilboudo, H., Simuunza, M., Eboo, V., . . . Consortium, H. (2017). A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations. PLOS NEGLECTED TROPICAL DISEASES, 11(10). doi:10.1371/journal.pntd.0005979

    DOI: 10.1371/journal.pntd.0005979

    Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea (Journal article)

    Kabore, J. W., Ilboudo, H., Noyes, H., Camara, O., Kabore, J., Camara, M., . . . Grp, T. R. (2017). Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea. PLOS NEGLECTED TROPICAL DISEASES, 11(8). doi:10.1371/journal.pntd.0005833

    DOI: 10.1371/journal.pntd.0005833

    Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Cote d'Ivoire (Journal article)

    Ahouty, B., Koffi, M., Ilboudo, H., Simo, G., Matovu, E., Mulindwa, J., . . . H3Africa, T. R. G. (2017). Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Cote d'Ivoire. PLOS NEGLECTED TROPICAL DISEASES, 11(10). doi:10.1371/journal.pntd.0005992

    DOI: 10.1371/journal.pntd.0005992

    Introducing the TrypanoGEN biobank: A valuable resource for the elimination of human African trypanosomiasis (Journal article)

    Ilboudo, H., Noyes, H., Mulindwa, J., Kimuda, M. P., Koffi, M., Kabore, J. W., . . . Consortium, H. (2017). Introducing the TrypanoGEN biobank: A valuable resource for the elimination of human African trypanosomiasis. PLOS NEGLECTED TROPICAL DISEASES, 11(6). doi:10.1371/journal.pntd.0005438

    DOI: 10.1371/journal.pntd.0005438

    Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus (Journal article)

    Craig, T., Holland, R., D'Amore, R., Johnson, J. R., McCue, H. V., West, A., . . . Caddick, M. (2017). Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus. ACS SYNTHETIC BIOLOGY, 6(12), 2273-2280. doi:10.1021/acssynbio.7b00212

    DOI: 10.1021/acssynbio.7b00212

    SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms (Journal article)

    D'Amore, R., Johnson, J., Haldenby, S., Hall, N., Hughes, M., Joynson, R., . . . Hall, A. (2017). SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63(1), 13-20. doi:10.2144/000114565

    DOI: 10.2144/000114565

    2016

    Companion: a web server for annotation and analysis of parasite genomes (Journal article)

    Steinbiss, S., Silva-Franco, F., Brunk, B., Foth, B., Hertz-Fowler, C., Berriman, M., & Otto, T. D. (2016). Companion: a web server for annotation and analysis of parasite genomes. NUCLEIC ACIDS RESEARCH, 44(W1), W29-W34. doi:10.1093/nar/gkw292

    DOI: 10.1093/nar/gkw292

    Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper. (Journal article)

    Meyer, V., Andersen, M. R., Brakhage, A. A., Braus, G. H., Caddick, M. X., Cairns, T. C., . . . Head, R. M. (2016). Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper.. Fungal biology and biotechnology, 3, 6. doi:10.1186/s40694-016-0024-8

    DOI: 10.1186/s40694-016-0024-8

    EuPathDB: the eukaryotic pathogen genomics database resource. (Journal article)

    Aurrecoechea, C., Barreto, A., Basenko, E. Y., Brestelli, J., Brunk, B. P., Cade, S., . . . Zheng, J. (2017). EuPathDB: the eukaryotic pathogen genomics database resource. NUCLEIC ACIDS RESEARCH, 45(D1), D581-D591. doi:10.1093/nar/gkw1105

    DOI: 10.1093/nar/gkw1105

    GeneMill: A 21st century platform for innovation (Journal article)

    Johnson, J. R., D'Amore, R., Thain, S. C., Craig, T., Mccue, H. V., Hertz-Fowler, C., . . . Hall, A. J. W. (2016). GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44, 681-683. doi:10.1042/BST20160012

    DOI: 10.1042/BST20160012

    2015

    TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei (Journal article)

    Shameer, S., Logan-Klumpler, F. J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., . . . Jourdan, F. (2015). TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. NUCLEIC ACIDS RESEARCH, 43(D1), D637-D644. doi:10.1093/nar/gku944

    DOI: 10.1093/nar/gku944

    2014

    Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity (Journal article)

    Dowall, S. D., Matthews, D. A., Garcia-Dorival, I., Taylor, I., Kenny, J., Hertz-Fowler, C., . . . Hiscox, J. A. (2014). Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity. GENOME BIOLOGY, 15(11). doi:10.1186/s13059-014-0540-x

    DOI: 10.1186/s13059-014-0540-x

    Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis (Journal article)

    Watanabe, J., Hattori, M., Berriman, M., Lehane, M. J., Hall, N., Solano, P., . . . IGGI. (2014). Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis. SCIENCE, 344(6182), 380-386. doi:10.1126/science.1249656

    DOI: 10.1126/science.1249656

    Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes (Journal article)

    Glover, L., Alsford, S., Baker, N., Turner, D. J., Sanchez-Flores, A., Hutchinson, S., . . . Horn, D. (2014). Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes. Nature Protocols, 10(1), 106-133. doi:10.1038/nprot.2015.005

    DOI: 10.1038/nprot.2015.005

    Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (Journal article)

    Ilott, N. E., Heward, J. A., Roux, B., Tsitsiou, E., Fenwick, P. S., Lenzi, L., . . . Lindsay, M. A. (2014). Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes. Nature Communications, 5(1). doi:10.1038/ncomms4979

    DOI: 10.1038/ncomms4979

    2012

    Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species (Journal article)

    Jackson, A. P., Berry, A., Aslett, M., Allison, H. C., Burton, P., Vavrova-Anderson, J., . . . Berriman, M. (2012). Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(9), 3416-3421. doi:10.1073/pnas.1117313109

    DOI: 10.1073/pnas.1117313109

    2011

    Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania (Journal article)

    Rogers, M. B., Hilley, J. D., Dickens, N. J., Wilkes, J., Bates, P. A., Depledge, D. P., . . . Mottram, J. C. (2011). Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Research, 21(12), 2129-2142. doi:10.1101/gr.122945.111

    DOI: 10.1101/gr.122945.111

    High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome (Journal article)

    Alsford, S., Turner, D. J., Obado, S. O., Sanchez-Flores, A., Glover, L., Berriman, M., . . . Horn, D. (2011). High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome Research, 21(6), 915-924. doi:10.1101/gr.115089.110

    DOI: 10.1101/gr.115089.110

    2010

    The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis (Journal article)

    Jackson, A. P., Sanders, M., Berry, A., McQuillan, J., Aslett, M. A., Quail, M. A., . . . Hertz-Fowler, C. (2010). The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis. PLOS NEGLECTED TROPICAL DISEASES, 4(4). doi:10.1371/journal.pntd.0000658

    DOI: 10.1371/journal.pntd.0000658

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