Prof Christiane Hertz-Fowler
Interim Dean of Institute of Integrative Biology, Chair in Pathogen Genomics IVES Professional Services
- Work email C.Hertz-Fowler@liverpool.ac.uk
- Personal WebsiteCentre for Genomic Research
Publications
2021
Author Correction: High-depth African genomes inform human migration and health. (Journal article)
Choudhury, A., Aron, S., Botigué, L. R., Sengupta, D., Botha, G., Bensellak, T., . . . Hanchard, N. A. (2021). Author Correction: High-depth African genomes inform human migration and health.. Nature, 592(7856), E26. doi:10.1038/s41586-021-03286-9
2020
High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation (Journal article)
Mulindwa, J., Noyes, H., Ilboudo, H., Pagani, L., Nyangiri, O., Kimuda, M. P., . . . Consortium, H. (2020). High Levels of Genetic Diversity within Nilo-Saharan Populations: Implications for Human Adaptation. AMERICAN JOURNAL OF HUMAN GENETICS, 107(3), 473-486. doi:10.1016/j.ajhg.2020.07.007
Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma (Journal article)
Thornton, S., Coupland, S. E., Olohan, L., Sibbring, J. S., Kenny, J. G., Hertz-Fowler, C., . . . Kalirai, H. (2020). Targeted Next-Generation Sequencing of 117 Routine Clinical Samples Provides Further Insights into the Molecular Landscape of Uveal Melanoma. CANCERS, 12(4). doi:10.3390/cancers12041039
Copy number variation in human genomes from three major ethno-linguistic groups in Africa (Journal article)
Nyangiri, O. A., Noyes, H., Mulindwa, J., Ilboudo, H., Kabore, J. W., Ahouty, B., . . . Consortium, H. (2020). Copy number variation in human genomes from three major ethno-linguistic groups in Africa. BMC GENOMICS, 21(1). doi:10.1186/s12864-020-6669-y
Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom (Journal article)
Haldenby, S., Bronowski, C., Nelson, C., Kenny, J., Martinez-Rodriguez, C., Chaudhuri, R., . . . Winstanley, C. (2020). Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLOS ONE, 15(01). doi:10.1371/journal.pone.0227535
2019
Macrophage migrating inhibitory factor expression is associated with Trypanosoma brucei gambiense infection and is controlled by trans-acting expression quantitative trait loci in the Guinean population (Journal article)
Kabore, J. W., Camara, O., Ilboudo, H., Capewell, P., Clucas, C., Cooper, A., . . . Consortium, H. (2019). Macrophage migrating inhibitory factor expression is associated with Trypanosoma brucei gambiense infection and is controlled by trans-acting expression quantitative trait loci in the Guinean population. INFECTION GENETICS AND EVOLUTION, 71, 108-115. doi:10.1016/j.meegid.2019.03.021
Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections (Journal article)
Jayaraman, S., Harris, C., Paxton, E., Donachie, A. -M., Vaikkinen, H., McCulloch, R., . . . Morrison, L. (2019). Application of long read sequencing to determine expressed antigen diversity in Trypanosoma brucei infections. PLoS Neglected Tropical Diseases. doi:10.1371/journal.pntd.0007262
Association between IL1 gene polymorphism and human African trypanosomiasis in populations of sleeping sickness foci of southern Cameroon (Journal article)
Ofon, E., Noyes, H., Eyanga, V. E., Njiokou, F., Koffi, M., Fogue, P., . . . Consortium, H. (2019). Association between IL1 gene polymorphism and human African trypanosomiasis in populations of sleeping sickness foci of southern Cameroon. PLOS NEGLECTED TROPICAL DISEASES, 13(3). doi:10.1371/journal.pntd.0007283
2018
The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense (Journal article)
Abbas, A. H., Pereira, S. S., D'Archivio, S., Wickstead, B., Morrison, L. J., Hall, N., . . . Jackson, A. P. (2018). The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense. Genome Biology and Evolution, 10(9), 2458-2473. doi:10.1093/gbe/evy186
FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes (Journal article)
Basenko, E. Y., Pulman, J. A., Shanmugasundram, A., Harb, O. S., Crouch, K., Starns, D., . . . Hertz-Fowler, C. (2018). FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes. JOURNAL OF FUNGI, 4(1). doi:10.3390/jof4010039
No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations (Journal article)
Kimuda, M. P., Noyes, H., Mulindwa, J., Enyaru, J., Alibu, V. P., Sidibe, I., . . . H3, T. R. G. M. (2018). No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations. PLOS NEGLECTED TROPICAL DISEASES, 12(2). doi:10.1371/journal.pntd.0006300
2017
A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations (Journal article)
Ofon, E., Noyes, H., Mulindwa, J., Ilboudo, H., Simuunza, M., Eboo, V., . . . Consortium, H. (2017). A polymorphism in the haptoglobin, haptoglobin related protein locus is associated with risk of human sleeping sickness within Cameroonian populations. PLOS NEGLECTED TROPICAL DISEASES, 11(10). doi:10.1371/journal.pntd.0005979
Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Cote d'Ivoire (Journal article)
Ahouty, B., Koffi, M., Ilboudo, H., Simo, G., Matovu, E., Mulindwa, J., . . . H3Africa, T. R. G. (2017). Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Cote d'Ivoire. PLOS NEGLECTED TROPICAL DISEASES, 11(10). doi:10.1371/journal.pntd.0005992
Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Côte d’Ivoire (Journal article)
Ahouty, B., Koffi, M., Ilboudo, H., Simo, G., Matovu, E., Mulindwa, J., . . . for the TrypanoGEN Research Group as members of The H3Africa Consortium. (2017). Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Côte d’Ivoire. doi:10.1101/186718
Evidence of population specific selection inferred from 289 genome sequences of Nilo-Saharan and Niger-Congo linguistic groups in Africa (Journal article)
Mulindwa, J., Noyes, H., Ilboudo, H., Nyangiri, O., Koffi, M., Mumba, D., . . . for the TrypanoGEN Research Group, as members of The H3Africa Consortium. (2017). Evidence of population specific selection inferred from 289 genome sequences of Nilo-Saharan and Niger-Congo linguistic groups in Africa. doi:10.1101/186700
Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus. (Journal article)
Craig, T., Holland, R., D'Amore, R., Johnson, J. R., McCue, H. V., West, A., . . . Caddick, M. X. (2017). Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus.. ACS synthetic biology, 6(12), 2273-2280. doi:10.1021/acssynbio.7b00212
No evidence for association with APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations (Journal article)
Kimuda, M. P., Noyes, H., Mulindwa, J., Enyaru, J., Alibu, V. P., Sidibe, I., . . . Matovu, E. (2017). No evidence for association with APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations. doi:10.1101/180679
Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea (Journal article)
Kabore, J. W., Ilboudo, H., Noyes, H., Camara, O., Kabore, J., Camara, M., . . . Grp, T. R. (2017). Candidate gene polymorphisms study between human African trypanosomiasis clinical phenotypes in Guinea. PLOS NEGLECTED TROPICAL DISEASES, 11(8). doi:10.1371/journal.pntd.0005833
Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality (Journal article)
Jones, N., Millman, C., van der Es, M., Hukelova, M., Forbes, K., Glover, C., . . . Lake, I. (2017). Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality. Applied and Environmental Microbiology, 83(14). doi:10.1128/AEM.00162-17
SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms (Journal article)
D'Amore, R., Johnson, J., Haldenby, S., Hall, N., Hughes, M., Joynson, R., . . . Hall, A. (2017). SMRT Gate: A method for validation of synthetic constructs on Pacific Biosciences sequencing platforms. BIOTECHNIQUES, 63(1), 13-20. doi:10.2144/000114565
Introducing the TrypanoGEN biobank: A valuable resource for the elimination of human African trypanosomiasis (Journal article)
Ilboudo, H., Noyes, H., Mulindwa, J., Kimuda, M. P., Koffi, M., Kabore, J. W., . . . Consortium, H. (2017). Introducing the TrypanoGEN biobank: A valuable resource for the elimination of human African trypanosomiasis. PLOS NEGLECTED TROPICAL DISEASES, 11(6). doi:10.1371/journal.pntd.0005438
EuPathDB: the eukaryotic pathogen genomics database resource. (Journal article)
Aurrecoechea, C., Barreto, A., Basenko, E. Y., Brestelli, J., Brunk, B. P., Cade, S., . . . Zheng, J. (2017). EuPathDB: the eukaryotic pathogen genomics database resource. NUCLEIC ACIDS RESEARCH, 45(D1), D581-D591. doi:10.1093/nar/gkw1105
2016
Companion: a web server for annotation and analysis of parasite genomes (Journal article)
Steinbiss, S., Silva-Franco, F., Brunk, B., Foth, B., Hertz-Fowler, C., Berriman, M., & Otto, T. D. (2016). Companion: a web server for annotation and analysis of parasite genomes. NUCLEIC ACIDS RESEARCH, 44(W1), W29-W34. doi:10.1093/nar/gkw292
GeneMill: A 21st century platform for innovation (Journal article)
Johnson, J. R., D'Amore, R., Thain, S. C., Craig, T., Mccue, H. V., Hertz-Fowler, C., . . . Hall, A. J. W. (2016). GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44, 681-683. doi:10.1042/BST20160012
Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach (Journal article)
Aljabr, W., Touzelet, O., Pollakis, G., Wu, W., Munday, D. C., Hughes, M., . . . Hiscox, J. A. (2016). Investigating the Influence of Ribavirin on Human Respiratory Syncytial Virus RNA Synthesis by Using a High-Resolution Transcriptome Sequencing Approach. JOURNAL OF VIROLOGY, 90(10), 4876-4888. doi:10.1128/JVI.02349-15
Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper. (Journal article)
Meyer, V., Andersen, M. R., Brakhage, A. A., Braus, G. H., Caddick, M. X., Cairns, T. C., . . . Head, R. M. (2016). Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper.. Fungal biology and biotechnology, 3, 6. doi:10.1186/s40694-016-0024-8
2015
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (vol 5, 3979, 2014) (Journal article)
Ilott, N. E., Heward, J. A., Roux, B., Tsitsiou, E., Fenwick, P. S., Lenzi, L., . . . Lindsay, M. A. (2015). Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (vol 5, 3979, 2014). NATURE COMMUNICATIONS, 6. doi:10.1038/ncomms7814
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei (Journal article)
Shameer, S., Logan-Klumpler, F. J., Vinson, F., Cottret, L., Merlet, B., Achcar, F., . . . Jourdan, F. (2015). TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. NUCLEIC ACIDS RESEARCH, 43(D1), D637-D644. doi:10.1093/nar/gku944
Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty (Journal article)
Carnes, J., Anupama, A., Balmer, O., Jackson, A., Lewis, M., Brown, R., . . . Schnaufer, A. (2015). Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty. PLOS NEGLECTED TROPICAL DISEASES, 9(1). doi:10.1371/journal.pntd.0003404
Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes (Journal article)
Glover, L., Alsford, S., Baker, N., Turner, D. J., Sanchez-Flores, A., Hutchinson, S., . . . Horn, D. (2015). Genome-scale RNAi screens for high-throughput phenotyping in bloodstream-form African trypanosomes. Nature Protocols, 10(1), 106-133. doi:10.1038/nprot.2015.005
2014
Enabling the genomic revolution in Africa (Journal article)
Rotimi, C., & Consortium, H. (2014). Enabling the genomic revolution in Africa. SCIENCE, 344(6190), 1346-1348. doi:10.1126/science.1251546
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes (Journal article)
Ilott, N. E., Heward,, J. A., Roux,, B., Tsitsiou,, E., Fenwick,, P. S., Lenzi,, L., . . . Lindsay,, M. A. (2014). Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes. Nature Communications, 5. doi:10.1038/ncomms4979
Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis. (Journal article)
International, G. G. I., Attardo, G. M., Abila, P. P., Auma, J. E., Baumann, A. A., Benoit, J. B., . . . al, E. (2014). Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis.. Science, 344(6182), 380-386. doi:10.1126/science.1249656
Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity (Journal article)
Dowall, S. D., Matthews, D. A., Garcia-Dorival, I., Taylor, I., Kenny, J., Hertz-Fowler, C., . . . Hiscox, J. A. (2014). Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity. GENOME BIOLOGY, 15(11). doi:10.1186/s13059-014-0540-x
2013
A Cell-surface Phylome for African Trypanosomes (Journal article)
Jackson, A. P., Allison, H. C., Barry, J. D., Field, M. C., Hertz-Fowler, C., & Berriman, M. (2013). A Cell-surface Phylome for African Trypanosomes. PLOS NEGLECTED TROPICAL DISEASES, 7(3). doi:10.1371/journal.pntd.0002121
2012
Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species (Journal article)
Jackson, A. P., Berry, A., Aslett, M., Allison, H. C., Burton, P., Vavrova-Anderson, J., . . . Berriman, M. (2012). Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(9), 3416-3421. doi:10.1073/pnas.1117313109
Expression of chemosensory proteins in the tsetse fly Glossina morsitans morsitans is related to female host-seeking behaviour (Journal article)
Liu, R., He, X., Lehane, S., Lehane, M., Hertz-Fowler, C., Berriman, M., . . . Zhou, J. -J. (2012). Expression of chemosensory proteins in the tsetse fly Glossina morsitans morsitans is related to female host-seeking behaviour. INSECT MOLECULAR BIOLOGY, 21(1), 41-48. doi:10.1111/j.1365-2583.2011.01114.x
GeneDB-an annotation database for pathogens (Journal article)
Logan-Klumpler, F. J., De Silva, N., Boehme, U., Rogers, M. B., Velarde, G., McQuillan, J. A., . . . Berriman, M. (2012). GeneDB-an annotation database for pathogens. NUCLEIC ACIDS RESEARCH, 40(D1), D98-D108. doi:10.1093/nar/gkr1032
2011
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania (Journal article)
Rogers, M. B., Hilley, J. D., Dickens, N. J., Wilkes, J., Bates, P. A., Depledge, D. P., . . . Mottram, J. C. (2011). Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. GENOME RESEARCH, 21(12), 2129-2142. doi:10.1101/gr.122945.111
Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance (Journal article)
Downing, T., Imamura, H., Decuypere, S., Clark, T. G., Coombs, G. H., Cotton, J. A., . . . Berriman, M. (2011). Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. GENOME RESEARCH, 21(12), 2143-2156. doi:10.1101/gr.123430.111
Differential protein expression throughout the life cycle of Trypanosoma congolense, a major parasite of cattle in Africa (Journal article)
Eyford, B. A., Sakurai, T., Smith, D., Loveless, B., Hertz-Fowler, C., Donelson, J. E., . . . Pearson, T. W. (2011). Differential protein expression throughout the life cycle of Trypanosoma congolense, a major parasite of cattle in Africa. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 177(2), 116-125. doi:10.1016/j.molbiopara.2011.02.009
High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome (Journal article)
Alsford, S., Turner, D. J., Obado, S. O., Sanchez-Flores, A., Glover, L., Berriman, M., . . . Horn, D. (2011). High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. GENOME RESEARCH, 21(6), 915-924. doi:10.1101/gr.115089.110
TSIDER1, a short and non-autonomous Salivarian trypanosome-specific retroposon related to the ingi6 subclade (Journal article)
Bringaud, F., Berriman, M., & Hertz-Fowler, C. (2011). TSIDER1, a short and non-autonomous Salivarian trypanosome-specific retroposon related to the ingi6 subclade. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 179(1), 30-36. doi:10.1016/j.molbiopara.2011.05.007
2010
Plant killers on the spot (Journal article)
Pain, A., & Hertz-Fowler, C. (2010). Plant killers on the spot. NATURE REVIEWS MICROBIOLOGY, 8(9), 615. doi:10.1038/nrmicro2433
Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach (Journal article)
Crowther, G. J., Shanmugam, D., Carmona, S. J., Doyle, M. A., Hertz-Fowler, C., Berriman, M., . . . Agueero, F. (2010). Identification of Attractive Drug Targets in Neglected-Disease Pathogens Using an In Silico Approach. PLOS NEGLECTED TROPICAL DISEASES, 4(8). doi:10.1371/journal.pntd.0000804
The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis (Journal article)
Jackson, A. P., Sanders, M., Berry, A., McQuillan, J., Aslett, M. A., Quail, M. A., . . . Hertz-Fowler, C. (2010). The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis. PLOS NEGLECTED TROPICAL DISEASES, 4(4). doi:10.1371/journal.pntd.0000658
Characterisations of odorant-binding proteins in the tsetse fly Glossina morsitans morsitans (Journal article)
Liu, R., Lehane, S., He, X., Lehane, M., Hertz-Fowler, C., Berriman, M., . . . Zhou, J. -J. (2010). Characterisations of odorant-binding proteins in the tsetse fly Glossina morsitans morsitans. CELLULAR AND MOLECULAR LIFE SCIENCES, 67(6), 919-929. doi:10.1007/s00018-009-0221-1
Multiple genetic mechanisms lead to loss of functional TbAT1 expression in drug-resistant trypanosomes. (Journal article)
Stewart, M. L., Burchmore, R. J. S., Clucas, C., Hertz-Fowler, C., Brooks, K., Tait, A., . . . Barrett, M. P. (2010). Multiple genetic mechanisms lead to loss of functional TbAT1 expression in drug-resistant trypanosomes.. Eukaryotic cell, 9(2), 336-343. doi:10.1128/ec.00200-09
2009
Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense (Journal article)
Helm, J. R., Hertz-Fowler, C., Aslett, M., Berriman, M., Sanders, M., Quail, M. A., . . . Donelson, J. E. (2009). Analysis of expressed sequence tags from the four main developmental stages of Trypanosoma congolense. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 168(1), 34-42. doi:10.1016/j.molbiopara.2009.06.004
Unity in diversity: lessons from Candida (Journal article)
Hertz-Fowler, C., & Pain, A. (2009). Unity in diversity: lessons from Candida. NATURE REVIEWS MICROBIOLOGY, 7(11), 763. doi:10.1038/nrmicro2253
TriTrypDB: a functional genomic resource for the Trypanosomatidae (Journal article)
Aslett, M., Aurrecoechea, C., Berriman, M., Brestelli, J., Brunk, B. P., Carrington, M., . . . Wang, H. (2010). TriTrypDB: a functional genomic resource for the Trypanosomatidae. NUCLEIC ACIDS RESEARCH, 38, D457-D462. doi:10.1093/nar/gkp851
The genome of the blood fluke Schistosoma mansoni (Journal article)
Berriman, M., Haas, B. J., LoVerde, P. T., Wilson, R. A., Dillon, G. P., Cerqueira, G. C., . . . El-Sayed, N. M. (2009). The genome of the blood fluke Schistosoma mansoni. NATURE, 460(7253), 352-U65. doi:10.1038/nature08160
Discovery of Mating in the Major African Livestock Pathogen Trypanosoma congolense (Journal article)
Morrison, L. J., Tweedie, A., Black, A., Pinchbeck, G. L., Christley, R. M., Schoenefeld, A., . . . Tait, A. (2009). Discovery of Mating in the Major African Livestock Pathogen Trypanosoma congolense. PLOS ONE, 4(5). doi:10.1371/journal.pone.0005564
Plasmodium genomics: latest milestone (Journal article)
Pain, A., & Hertz-Fowler, C. (2009). Plasmodium genomics: latest milestone. NATURE REVIEWS MICROBIOLOGY, 7(3), 180-181. doi:10.1038/nrmicro2096
Trypanosomatid Genomes Contain Several Subfamilies of ingi-Related Retroposons (Journal article)
Bringaud, F., Berriman, M., & Hertz-Fowler, C. (2009). Trypanosomatid Genomes Contain Several Subfamilies of ingi-Related Retroposons. EUKARYOTIC CELL, 8(10), 1532-1542. doi:10.1128/EC.00183-09
2008
Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei (Journal article)
Hertz-Fowler, C., Figueiredo, L. M., Quail, M. A., Becker, M., Jackson, A., Bason, N., . . . Berriman, M. (2008). Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei. PLOS ONE, 3(10). doi:10.1371/journal.pone.0003527
Sequence data swell for nematodes (Journal article)
Hertz-Fowler, C., & Pain, A. (2008). Sequence data swell for nematodes. NATURE REVIEWS MICROBIOLOGY, 6(11), 800-801. doi:10.1038/nrmicro2021
Genomic-scale prioritization of drug targets: the TDR Targets database (Journal article)
Agueero, F., Al-Lazikani, B., Aslett, M., Berriman, M., Buckner, F. S., Campbell, R. K., . . . Verlinde, C. L. M. J. (2008). Genomic-scale prioritization of drug targets: the TDR Targets database. NATURE REVIEWS DRUG DISCOVERY, 7(11), 900-907. doi:10.1038/nrd2684
Genomic adaptation: a fungal perspective (Journal article)
Pain, A., & Hertz-Fowler, C. (2008). Genomic adaptation: a fungal perspective. NATURE REVIEWS MICROBIOLOGY, 6(8), 572-573. doi:10.1038/nrmicro1964
The minimum information about a genome sequence (MIGS) specification (Journal article)
Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., . . . Wipat, A. (2008). The minimum information about a genome sequence (MIGS) specification. NATURE BIOTECHNOLOGY, 26(5), 541-547. doi:10.1038/nbt1360
Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei (Journal article)
Hertz-Fowler, C., Figueiredo, L. M., Quail, M. A., Becker, M., Jackson, A., Bason, N., . . . Berriman, M. (n.d.). Telomeric Expression Sites Are Highly Conserved in Trypanosoma brucei. PLoS ONE, 3(10), e3527. doi:10.1371/journal.pone.0003527
2007
Genome watch - Specialist fungi, versatile genomes (Journal article)
Hertz-Fowler, C., & Pain, A. (2007). Genome watch - Specialist fungi, versatile genomes. NATURE REVIEWS MICROBIOLOGY, 5(5), 332-333. doi:10.1038/nrmicro1669
2005
What the genome sequence is revealing about trypanosome antigenic variation (Conference Paper)
Barry, J. D., Marcello, L., Morrison, L. J., Read, A. F., Lythgoe, K., Jones, N., . . . Berriman, M. (2005). What the genome sequence is revealing about trypanosome antigenic variation. In BIOCHEMICAL SOCIETY TRANSACTIONS Vol. 33 (pp. 986-989). doi:10.1042/BST0330986
What the genome sequence is revealing about trypanosome antigenic variation. (Journal article)
Barry, J. D., Marcello, L., Morrison, L. J., Read, A. F., Lythgoe, K., Jones, N., . . . Berriman, M. (2005). What the genome sequence is revealing about trypanosome antigenic variation.. Biochemical Society transactions, 33(Pt 5), 986-989. doi:10.1042/bst20050986
A feast of protozoan genomes (Journal article)
Hertz-Fowler, C., Berriman, M., & Pain, A. (2005). A feast of protozoan genomes. NATURE REVIEWS MICROBIOLOGY, 3(9), 670-671. doi:10.1038/nrmicro1237
Comparative genomics of trypanosomatid parasitic protozoa (Journal article)
El-Sayed, N. M., Myler, P. J., Blandin, G., Berriman, M., Crabtree, J., Aggarwal, G., . . . Hall, N. (2005). Comparative genomics of trypanosomatid parasitic protozoa. SCIENCE, 309(5733), 404-409. doi:10.1126/science.1112181
The genome of the African trypanosome Trypanosoma brucei (Journal article)
Berriman, M., Ghedin, E., Hertz-Fowler, C., Blandin, G., Renauld, H., Bartholomeu, D. C., . . . El-Sayed, N. M. (2005). The genome of the African trypanosome Trypanosoma brucei. SCIENCE, 309(5733), 416-422. doi:10.1126/science.1112642
The genome of the kinetoplastid parasite, Leishmania major (Journal article)
Ivens, A. C., Peacock, C. S., Worthey, E. A., Murphy, L., Aggarwal, G., Berriman, M., . . . Myler, P. J. (2005). The genome of the kinetoplastid parasite, Leishmania major. SCIENCE, 309(5733), 436-442. doi:10.1126/science.1112680
Integration of tools and resources for display and analysis of genomic data for protozoan parasites (Journal article)
Aslett, M., Mooney, P., Adlem, E., Berriman, M., Berry, A., Hertz-Fowler, C., . . . Tivey, A. (2005). Integration of tools and resources for display and analysis of genomic data for protozoan parasites. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 35(5), 481-493. doi:10.1016/j.ijpara.2005.01.011
2004
Continuing tsetse and Trypanosoma genome sequencing projects (Journal article)
Hertz-Fowler, C., & Berriman, M. (2004). Continuing tsetse and Trypanosoma genome sequencing projects. TRENDS IN PARASITOLOGY, 20(7), 308-309. doi:10.1016/j.pt.2004.04.013
GeneDB: a resource for prokaryotic and eukaryotic organisms (Journal article)
Hertz-Fowler, C., Peacock, C. S., Wood, V., Aslett, M., Kerhornou, A., Mooney, P., . . . Barrell, B. (2004). GeneDB: a resource for prokaryotic and eukaryotic organisms. NUCLEIC ACIDS RESEARCH, 32, D339-D343. doi:10.1093/nar/gkh007
GeneDB: a resource for prokaryotic and eukaryotic organisms. (Journal article)
Hertz-Fowler, C., Peacock, C. S., Wood, V., Aslett, M., Kerhornou, A., Mooney, P., . . . Barrell, B. (2004). GeneDB: a resource for prokaryotic and eukaryotic organisms.. Nucleic acids research, 32(Database issue), D339-D343. doi:10.1093/nar/gkh007
Parasite genome databases and web-based resources. (Journal article)
Hertz-Fowler, C., & Hall, N. (2004). Parasite genome databases and web-based resources.. Methods in molecular biology (Clifton, N.J.), 270, 45-74. doi:10.1385/1-59259-793-9:045
2003
The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism (Journal article)
Hall, N., Berriman, M., Lennard, N. J., Harris, B. R., Hertz-Fowler, C., Bart-Delabesse, E. N., . . . Melville, S. E. (2003). The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism. NUCLEIC ACIDS RESEARCH, 31(16), 4864-4873. doi:10.1093/nar/gkg674
2002
Introducing GeneDB: a generic database (Journal article)
Hertz-Fowler, C., & Peacock, C. S. (2002). Introducing GeneDB: a generic database. Trends in Parasitology, 18(10), 465-467. doi:10.1016/s1471-4922(02)02361-9
2001
CAP5.5, a life-cycle-regulated, cytoskeleton-associated protein is a member of a novel family of calpain-related proteins in Trypanosoma brucei (Journal article)
Hertz-Fowler, C., Ersfeld, K., & Gull, K. (2001). CAP5.5, a life-cycle-regulated, cytoskeleton-associated protein is a member of a novel family of calpain-related proteins in Trypanosoma brucei. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 116(1), 25-34. doi:10.1016/S0166-6851(01)00296-1
Erratum to “CAP5.5, a life-cycle-regulated, cytoskeleton-associated protein is a member of a novel family of calpain-related proteins in Trypanosoma brucei” (Journal article)
Hertz-Fowler, C., Ersfeld, K., & Gull, K. (2001). Erratum to “CAP5.5, a life-cycle-regulated, cytoskeleton-associated protein is a member of a novel family of calpain-related proteins in Trypanosoma brucei”. Molecular and Biochemical Parasitology, 117(1), 119. doi:10.1016/s0166-6851(01)00347-4