2023
A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome. (Preprint)
DOI: 10.1101/2023.11.17.567512
Turlo, A. J., Hammond, D. E., Ramsbottom, K. A., Soul, J., Gillen, A., McDonald, K., & Peffers, M. J. (2023). Mesenchymal Stromal Cell Secretome Is Affected by Tissue Source and Donor Age.. Stem cells (Dayton, Ohio), 41(11), 1047-1059. doi:10.1093/stmcls/sxad060DOI: 10.1093/stmcls/sxad060
Camacho, O. M., Ramsbottom, K. A., Collins, A., & Jones, A. R. (2023). Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets. JOURNAL OF PROTEOME RESEARCH, 22(6), 1828-1842. doi:10.1021/acs.jproteome.2c00823DOI: 10.1021/acs.jproteome.2c00823
2022
Assessing multiple evidence streams to decide on confidence for identification of post-translational modifications, within and across data sets (Preprint)
DOI: 10.1101/2022.12.15.520504
Ramsbottom, K. A., Prakash, A., Riverol, Y. P., Camacho, O. M., Martin, M. -J., Vizcaino, J. A., . . . Jones, A. R. (2022). Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. JOURNAL OF PROTEOME RESEARCH. doi:10.1021/acs.jproteome.1c00827DOI: 10.1021/acs.jproteome.1c00827
2021
Ramsbottom, K., Prakash, A., Riverol, Y. P., Camacho, O. M., Martin, M., Vizcaíno, J. A., . . . Jones, A. (2021). A method for independent estimation of false localisation rate for phosphoproteomics. doi:10.1101/2021.10.18.464791DOI: 10.1101/2021.10.18.464791
Engdahl, E., van Schijndel, M. D. M., Voulgaris, D., Di Criscio, M., Ramsbottom, K. A., Rigden, D. J., . . . Ruegg, J. (2021). Bisphenol A Inhibits the Transporter Function of the Blood-Brain Barrier by Directly Interacting with the ABC Transporter Breast Cancer Resistance Protein (BCRP). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(11). doi:10.3390/ijms22115534DOI: 10.3390/ijms22115534
2020
Ramsbottom, K. (2020, February 10). Informatics investigations into HLA-mediated adverse drug reactions.
Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles (Journal article)
Ramsbottom, K. A., Carr, D. F., Rigden, D. J., & Jones, A. R. (2020). Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles. PLOS ONE, 15(2). doi:10.1371/journal.pone.0220754DOI: 10.1371/journal.pone.0220754
Gonzalez-Galarza, F. F., McCabe, A., Santos, E. J. M. D., Jones, J., Takeshita, L., Ortega-Rivera, N. D., . . . Jones, A. R. (n.d.). Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Research. doi:10.1093/nar/gkz1029DOI: 10.1093/nar/gkz1029
2018
Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions (Journal article)
Ramsbottom, K. A., Carr, D. F., Jones, A. R., & Rigden, D. J. (2018). Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions. MOLECULAR IMMUNOLOGY, 101, 488-499. doi:10.1016/j.molimm.2018.08.003DOI: 10.1016/j.molimm.2018.08.003
Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with Adverse Drug Reactions (Preprint)
DOI: 10.1101/296574
