Dr Kieran Sharkey

Reader Mathematical Sciences

    Publications

    2020

    Integration of shared-pathogen networks and machine learning reveals the key aspects of zoonoses and predicts mammalian reservoirs. (Journal article)

    Wardeh, M., Sharkey, K. J., & Baylis, M. (2020). Integration of shared-pathogen networks and machine learning reveals the key aspects of zoonoses and predicts mammalian reservoirs.. Proceedings. Biological sciences, 287(1920), 20192882. doi:10.1098/rspb.2019.2882

    DOI: 10.1098/rspb.2019.2882

    2019

    The contact structure of Great Britain's salmon and trout aquaculture industry (Journal article)

    Jones, A. E., Munro, L. A., Greed, D. M., Morgan, K. L., Murray, A. G., Norman, R., . . . Sharkey, K. J. (2019). The contact structure of Great Britain's salmon and trout aquaculture industry. EPIDEMICS, 28. doi:10.1016/j.epidem.2019.05.001

    DOI: 10.1016/j.epidem.2019.05.001

    Methods for approximating stochastic evolutionary dynamics on graphs (Journal article)

    Overton, C. E., Broom, M., Hadjichrysanthou, C., & Sharkey, K. J. (2019). Methods for approximating stochastic evolutionary dynamics on graphs. JOURNAL OF THEORETICAL BIOLOGY, 468, 45-59. doi:10.1016/j.jtbi.2019.02.009

    DOI: 10.1016/j.jtbi.2019.02.009

    Localization of eigenvector centrality in networks with a cut vertex (Journal article)

    Sharkey, K. J. (2019). Localization of eigenvector centrality in networks with a cut vertex. Phys. Rev. E, 99, 012315. doi:10.1103/PhysRevE.99.012315

    DOI: 10.1103/PhysRevE.99.012315

    2018

    A Combined In Vitro/In Silico Approach to Identifying Off-Target Receptor Toxicity (Journal article)

    Leedale, J., Sharkey, K. J., Colley, H. E., Norton, A. M., Peeney, D., Mason, C. L., . . . Webb, S. D. (2018). A Combined In Vitro/In Silico Approach to Identifying Off-Target Receptor Toxicity. ISCIENCE, 4, 84-+. doi:10.1016/j.isci.2018.05.012

    DOI: 10.1016/j.isci.2018.05.012

    Impact of the infectious period on epidemics (Journal article)

    Wilkinson, R. R., & Sharkey, K. J. (2018). Impact of the infectious period on epidemics. PHYSICAL REVIEW E, 97(5). doi:10.1103/PhysRevE.97.052403

    DOI: 10.1103/PhysRevE.97.052403

    2017

    A control analysis perspective on Katz centrality (Journal article)

    Sharkey, K. J. (2017). A control analysis perspective on Katz centrality. SCIENTIFIC REPORTS, 7. doi:10.1038/s41598-017-15426-1

    DOI: 10.1038/s41598-017-15426-1

    The relationships between message passing, pairwise, Kermack-McKendrick and stochastic SIR epidemic models (Journal article)

    Wilkinson, R. R., Ball, F. G., & Sharkey, K. J. (2017). The relationships between message passing, pairwise, Kermack-McKendrick and stochastic SIR epidemic models. JOURNAL OF MATHEMATICAL BIOLOGY, 75(6-7), 1563-1590. doi:10.1007/s00285-017-1123-8

    DOI: 10.1007/s00285-017-1123-8

    2016

    The deterministic Kermack-McKendrick model bounds the general stochastic epidemic (Journal article)

    Wilkinson, R. R., Ball, F. G., & Sharkey, K. J. (2016). THE DETERMINISTIC KERMACK-MCKENDRICK MODEL BOUNDS THE GENERAL STOCHASTIC EPIDEMIC. JOURNAL OF APPLIED PROBABILITY, 53(4), 1031-1040. doi:10.1017/jpr.2016.62

    The Differential Warming Response of Britain's Rivers (1982-2011) (Journal article)

    Jonkers, A. R. T., & Sharkey, K. J. (2016). The Differential Warming Response of Britain's Rivers (1982-2011). PLOS ONE, 11(11). doi:10.1371/journal.pone.0166247

    DOI: 10.1371/journal.pone.0166247

    Discrete-time moment closure models for epidemic spreading in populations of interacting individuals (Journal article)

    Frasca, M., & Sharkey, K. J. (2016). Discrete-time moment closure models for epidemic spreading in populations of interacting individuals. JOURNAL OF THEORETICAL BIOLOGY, 399, 13-21. doi:10.1016/j.jtbi.2016.03.024

    DOI: 10.1016/j.jtbi.2016.03.024

    2015

    Complete hierarchies of SIR models on arbitrary networks with exact and approximate moment closure (Journal article)

    Sharkey, K. J., & Wilkinson, R. R. (2015). Complete hierarchies of SIR models on arbitrary networks with exact and approximate moment closure. MATHEMATICAL BIOSCIENCES, 264, 74-85. doi:10.1016/j.mbs.2015.03.008

    DOI: 10.1016/j.mbs.2015.03.008

    Erratum: Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks [Phys. Rev. E89, 022808 (2014)] (Journal article)

    Ball, F. G., Wilkinson, R. R., & Sharkey, K. J. (n.d.). Erratum: Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks [Phys. Rev. E89, 022808 (2014)]. Physical Review E, 92(3). doi:10.1103/physreve.92.039904

    DOI: 10.1103/physreve.92.039904

    Exact Equations for SIR Epidemics on Tree Graphs (Journal article)

    Sharkey, K. J., Kiss, I. Z., Wilkinson, R. R., & Simon, P. L. (2015). Exact Equations for SIR Epidemics on Tree Graphs. BULLETIN OF MATHEMATICAL BIOLOGY, 77(4), 614-645. doi:10.1007/s11538-013-9923-5

    DOI: 10.1007/s11538-013-9923-5

    Epidemic control analysis: Designing targeted intervention strategies against epidemics propagated on contact networks (Journal article)

    Hadjichrysanthou, C., & Sharkey, K. J. (2015). Epidemic control analysis: Designing targeted intervention strategies against epidemics propagated on contact networks. JOURNAL OF THEORETICAL BIOLOGY, 365, 84-95. doi:10.1016/j.jtbi.2014.10.006

    DOI: 10.1016/j.jtbi.2014.10.006

    2014

    Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks (Journal article)

    Wilkinson, R. R., & Sharkey, K. J. (2014). Message passing and moment closure for susceptible-infected-recovered epidemics on finite networks. PHYSICAL REVIEW E, 89(2). doi:10.1103/PhysRevE.89.022808

    DOI: 10.1103/PhysRevE.89.022808

    Tight Control of Hypoxia-inducible Factor-alpha Transient Dynamics Is Essential for Cell Survival in Hypoxia (Journal article)

    Bagnall, J., Leedale, J., Taylor, S. E., Spiller, D. G., White, M. R. H., Sharkey, K. J., . . . See, V. (2014). Tight Control of Hypoxia-inducible Factor-alpha Transient Dynamics Is Essential for Cell Survival in Hypoxia. JOURNAL OF BIOLOGICAL CHEMISTRY, 289(9), 5549-5564. doi:10.1074/jbc.M113.500405

    DOI: 10.1074/jbc.M113.500405

    2013

    A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions (Journal article)

    Kotze, H. L., Armitage, E. G., Sharkey, K. J., Allwood, J. W., Dunn, W. B., Williams, K. J., & Goodacre, R. (2013). A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions. BMC SYSTEMS BIOLOGY, 7. doi:10.1186/1752-0509-7-107

    DOI: 10.1186/1752-0509-7-107

    An Exact Relationship Between Invasion Probability and Endemic Prevalence for Markovian SIS Dynamics on Networks (Journal article)

    Wilkinson, R. R., & Sharkey, K. J. (2013). An Exact Relationship Between Invasion Probability and Endemic Prevalence for Markovian SIS Dynamics on Networks. PLOS ONE, 8(7). doi:10.1371/journal.pone.0069028

    DOI: 10.1371/journal.pone.0069028

    2011

    Deterministic epidemic models on contact networks: Correlations and unbiological terms (Journal article)

    Sharkey, K. J. (2011). Deterministic epidemic models on contact networks: Correlations and unbiological terms. THEORETICAL POPULATION BIOLOGY, 79(4), 115-129. doi:10.1016/j.tpb.2011.01.004

    DOI: 10.1016/j.tpb.2011.01.004

    2010

    Epidemics and control strategies for diseases of farmed salmonids: A parameter study (Journal article)

    Jonkers, A. R. T., Sharkey, K. J., Thrush, M. A., Turnbull, J. F., & Morgan, K. L. (2010). Epidemics and control strategies for diseases of farmed salmonids: A parameter study. EPIDEMICS, 2(4), 195-206. doi:10.1016/j.epidem.2010.08.001

    DOI: 10.1016/j.epidem.2010.08.001

    Epidemics and control strategies for diseases of farmed salmonids: A parameter study (Journal article)

    Jonkers, A. R. T., Sharkey, K. J., Thrush, M. A., Turnbull, J. F., & Morgan, K. L. (2010). Epidemics and control strategies for diseases of farmed salmonids: A parameter study. Epidemics, 2(4), 195-206. doi:10.1016/j.epidem.2010.08.001

    DOI: 10.1016/j.epidem.2010.08.001

    Preventable H5N1 avian influenza epidemics in the British poultry industry network exhibit characteristic scales (Journal article)

    Jonkers, A. R. T., Sharkey, K. J., & Christley, R. M. (2010). Preventable H5N1 avian influenza epidemics in the British poultry industry network exhibit characteristic scales. JOURNAL OF THE ROYAL SOCIETY INTERFACE, 7(45), 695-701. doi:10.1098/rsif.2009.0304

    DOI: 10.1098/rsif.2009.0304

    2009

    SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. (Journal article)

    Albers, S. -V., Birkeland, N. -K., Driessen, A. J. M., Gertig, S., Haferkamp, P., Klenk, H. -P., . . . Zaparty, M. (2009). SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.. Biochemical Society transactions, 37(Pt 1), 58-64. doi:10.1042/bst0370058

    DOI: 10.1042/bst0370058

    2008

    Deterministic epidemiological models at the individual level (Journal article)

    Sharkey, K. J. (2008). Deterministic epidemiological models at the individual level. JOURNAL OF MATHEMATICAL BIOLOGY, 57(3), 311-331. doi:10.1007/s00285-008-0161-7

    DOI: 10.1007/s00285-008-0161-7

    Epidemiological consequences of an incursion of highly pathogenic H5N1 avian influenza into the British poultry flock (Journal article)

    Sharkey, K. J., Bowers, R. G., Morgan, K. L., Robinson, S. E., & Christley, R. M. (2008). Epidemiological consequences of an incursion of highly pathogenic H5N1 avian influenza into the British poultry flock. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 275(1630), 19-28. doi:10.1098/rspb.2007.1100

    DOI: 10.1098/rspb.2007.1100

    2006

    Pair-level approximations to the spatio-temporal dynamics of epidemics on asymmetric contact networks (Journal article)

    Sharkey, K. J., Fernandez, C., Morgan, K. L., Peeler, E., Thrush, M., Turnbull, J. F., & Bowers, R. G. (2006). Pair-level approximations to the spatio-temporal dynamics of epidemics on asymmetric contact networks. JOURNAL OF MATHEMATICAL BIOLOGY, 53(1), 61-85. doi:10.1007/s00285-006-0377-3

    DOI: 10.1007/s00285-006-0377-3

    2004

    Tracking seismic waves (Conference Paper)

    Parsons, R. J., & Sharkey, K. J. (2004). Tracking seismic waves. In IEE Conference Publication (pp. 77-82).

    2002

    Effects of non-perturbatively improved dynamical fermions in QCD at fixed lattice spacing (Journal article)

    Collaboration, U. K. Q. C. D., Allton, C. R., Booth, S. P., Bowler, K. C., Garden, J., Hart, A., . . . Wittig, H. (n.d.). Effects of non-perturbatively improved dynamical fermions in QCD at fixed lattice spacing. Phys.Rev.D, 65, 054502. doi:10.1103/PhysRevD.65.054502

    DOI: 10.1103/PhysRevD.65.054502

    2001

    Is the up-quark massless? (Journal article)

    Collaboration, U. K. Q. C. D., Irving, A. C., McNeile, C., Michael, C., Sharkey, K. J., & Wittig, H. (n.d.). Is the up-quark massless?. Phys.Lett.B, 518, 243-251. doi:10.1016/S0370-2693(01)01062-0

    DOI: 10.1016/S0370-2693(01)01062-0

    The flavour singlet mesons in QCD (Journal article)

    Collaboration, U. K. Q. C. D., McNeile, C., Michael, C., & Sharkey, K. J. (n.d.). The flavour singlet mesons in QCD. Phys.Rev.D, 65, 014508. doi:10.1103/PhysRevD.65.014508

    DOI: 10.1103/PhysRevD.65.014508

    2000

    Lattice calculation of 1/p2 corrections to αs and of ΛQCD in the MOM scheme (Journal article)

    Boucaud, P., Burgio, G., Di Renzo, F., Leroy, J. P., Micheli, J., Parrinello, C., . . . Sharkey, K. (2000). Lattice calculation of 1/p2 corrections to αs and of ΛQCD in the MOM scheme. Journal of High Energy Physics, 4(4).

    Lattice calculation of 1/p2 corrections to αs and of Λ(QCD) in the MOM-tilde scheme (Journal article)

    Boucaud, P., Burgio, G., Renzo, F. D., Leroy, J. P., Micheli, J., Parrinello, C., . . . Sharkey, K. (n.d.). Lattice calculation of 1/p2 corrections to αs and of Λ(QCD) in the MOM-tilde scheme. Journal of High Energy Physics, 2000(04), 006. doi:10.1088/1126-6708/2000/04/006

    DOI: 10.1088/1126-6708/2000/04/006