2017
Tacutu, R., Thornton, D., Johnson, E., Budovsky, A., Barardo, D., Craig, T., . . . de Magalhaes, J. P. (2017). Human Ageing Genomic Resources: new and updated databases. NUCLEIC ACIDS RESEARCH, 46(D1), D1083-D1090. doi:10.1093/nar/gkx1042DOI: 10.1093/nar/gkx1042
Craig, T., Holland, R., D'Amore, R., Johnson, J. R., McCue, H. V., West, A., . . . Caddick, M. X. (2017). Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus.. ACS synthetic biology, 6(12), 2273-2280. doi:10.1021/acssynbio.7b00212DOI: 10.1021/acssynbio.7b00212
2016
Johnson, J. R., D'Amore, R., Thain, S. C., Craig, T., Mccue, H. V., Hertz-Fowler, C., . . . Hall, A. J. W. (2016). GeneMill: A 21st century platform for innovation. BIOCHEMICAL SOCIETY TRANSACTIONS, 44, 681-683. doi:10.1042/BST20160012DOI: 10.1042/BST20160012
2015
Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging. (Journal article)
Wood, S. H., van Dam, S., Craig, T., Tacutu, R., O'Toole, A., Merry, B. J., & De Magalhaes, J. P. (2015). Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging.. Genome biology, 16(1). doi:10.1186/s13059-015-0847-2DOI: 10.1186/s13059-015-0847-2
GeneFriends: a human RNA-seq-based gene
and transcript co-expression database (Journal article)
van Dam, S., Craig, T., & De Magalhaes, J. P. (2015). GeneFriends: a human RNA-seq-based geneand transcript co-expression database. Nucleic Acids Research, 43(D1), D1124-D1132. doi:10.1093/nar/gku1042DOI: 10.1093/nar/gku1042
The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource (Journal article)
Craig, T., Smelick, C., Tacutu, R., Wuttke, D., Wood, S. H., Stanley, H., . . . De Magalhaes, J. P. (2015). The Digital Ageing Atlas: integrating the diversity of age-related changes into a unified resource. Nucleic Acids Research, 43(D1), D873-D878. doi:10.1093/nar/gku843DOI: 10.1093/nar/gku843
Insights into the evolution of longevity from the bowhead whale genome. (Journal article)
Keane, M., Semeiks, J., Webb, A. E., Li, Y. I., Quesada, V., Craig, T., . . . De Magalhaes, J. P. (2015). Insights into the evolution of longevity from the bowhead whale genome.. Cell reports, 10(1), 112-122. doi:10.1016/j.celrep.2014.12.008DOI: 10.1016/j.celrep.2014.12.008
2014
The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations (Journal article)
Keane, M., Craig, T., Alfoeldi, J., Berlin, A. M., Johnson, J., Seluanov, A., . . . de Magalhaes, J. P. (2014). The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. BIOINFORMATICS, 30(24), 3558-3560. doi:10.1093/bioinformatics/btu579DOI: 10.1093/bioinformatics/btu579
2013
LongevityMap: a database of human genetic variants associated with longevity (Journal article)
Budovsky, A., Craig, T., Wang, J., Tacutu, R., Csordas, A., Lourenco, J., . . . de Magalhaes, J. P. (2013). LongevityMap: a database of human genetic variants associated with longevity. TRENDS IN GENETICS, 29(10), 559-560. doi:10.1016/j.tig.2013.08.003DOI: 10.1016/j.tig.2013.08.003
Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome (Journal article)
Wood, S. H., Craig, T., Li, Y., Merry, B., & de Magalhaes, J. P. (2013). Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome. AGE, 35(3), 763-776. doi:10.1007/s11357-012-9410-1DOI: 10.1007/s11357-012-9410-1
Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing (Journal article)
Tacutu, R., Craig, T., Budovsky, A., Wuttke, D., Lehmann, G., Taranukha, D., . . . de Magalhaes, J. P. (2013). Human Ageing Genomic Resources: Integrated databases and tools for the biology and genetics of ageing. NUCLEIC ACIDS RESEARCH, 41(D1), D1027-D1033. doi:10.1093/nar/gks1155DOI: 10.1093/nar/gks1155
2012
GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases (Journal article)
van Dam, S., Cordeiro, R., Craig, T., van Dam, J., Wood, S. H., & de Magalhaes, J. P. (2012). GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases. BMC GENOMICS, 13. doi:10.1186/1471-2164-13-535DOI: 10.1186/1471-2164-13-535
Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes (Journal article)
Wuttke, D., Connor, R., Vora, C., Craig, T., Li, Y., Wood, S., . . . de Magalhaes, J. P. (2012). Dissecting the Gene Network of Dietary Restriction to Identify Evolutionarily Conserved Pathways and New Functional Genes. PLOS GENETICS, 8(8). doi:10.1371/journal.pgen.1002834DOI: 10.1371/journal.pgen.1002834