2024
Thinking Phage Innovations Through Evolution and Ecology (Journal article)
Brives, C., Froissart, R., Perez-Sepulveda, B., & Le Marrec, C. (2024). Thinking Phage Innovations Through Evolution and Ecology. PHAGE, 5(1), 5-13. doi:10.1089/phage.2023.0047DOI: 10.1089/phage.2023.0047
2023
Bernal, J. F., Díaz, P. L., Perez-Sepulveda, B. M., Valencia-Guerrero, M. F., Clavijo, V., Weisner, M., . . . Donado-Godoy, P. (2023). A one health approach based on genomics for enhancing the Salmonella enterica surveillance in Colombia. IJID Regions. doi:10.1016/j.ijregi.2023.09.008DOI: 10.1016/j.ijregi.2023.09.008
Cuypers, W. L., Meysman, P., Weill, F. -X., Hendriksen, R. S., Beyene, G., Wain, J., . . . Van Puyvelde, S. (2023). A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia.. Nature communications, 14(1), 3517. doi:10.1038/s41467-023-38902-xDOI: 10.1038/s41467-023-38902-x
Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017 (Journal article)
Florez-Delgado, N. Y., Ubillus, E. N., Perez-Sepulveda, B., Ospina-Rios, E. L., Carrascal-Camacho, A. K., Chamorro-Tobar, I. C., . . . Wiesner, M. (2023). Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017. JOURNAL OF MEDICAL MICROBIOLOGY, 72(6). doi:10.1099/jmm.0.001704DOI: 10.1099/jmm.0.001704
Fong, W. Y., Canals, R., Predeus, A. V., Perez-Sepulveda, B., Wenner, N., Lora, L. L., . . . Hinton, J. C. D. (2023). Genome- wide fitness analysis identifies genes required for in vitro growth and macrophage infection by African and global epidemic pathovariants of Salmonella enterica Enteritidis. MICROBIAL GENOMICS, 9(5). doi:10.1099/mgen.0.001017DOI: 10.1099/mgen.0.001017
Smith, C., Smith, E., Chiu, C., Hinton, J., Perez Sepulveda, B., Gordon, M., . . . CHANTS Consortium. (2023). The Challenge Non-Typhoidal Salmonella (CHANTS) Consortium: Development of a non-typhoidal Salmonella controlled human infection model: Report from a consultation group workshop, 05 July 2022, London, UK. doi:10.12688/wellcomeopenres.19012.1DOI: 10.12688/wellcomeopenres.19012.1
2022
Gallichan, S., Perez-Sepulveda, B. M., Feasey, N. A., Hinton, J. C. D., Thomas, J., & Smith, A. M. (2022). Multiplex PCR Assay for Clade Typing of <i>Salmonella enterica</i> Serovar Enteritidis. MICROBIOLOGY SPECTRUM, 10(6). doi:10.1128/spectrum.03182-22DOI: 10.1128/spectrum.03182-22
Koolman, L., Prakash, R., Diness, Y., Msefula, C., Nyirenda, T. S., Olgemoeller, F., . . . Gordon, M. A. (2022). Case-control investigation of invasive Salmonella disease in Malawi reveals no evidence of environmental or animal transmission of invasive strains, and supports human to human transmission.. PLoS neglected tropical diseases, 16(12), e0010982. doi:10.1371/journal.pntd.0010982DOI: 10.1371/journal.pntd.0010982
How to sequence 10,000 bacterial genomes and retain your sanity: an accessible, efficient and global approach (Journal article)
Perez-Sepulveda, B., Heavens, D., Pulford, C., Predeus, A., Low, R., Webster, H., . . . Hall, N. (2022). How to sequence 10,000 bacterial genomes and retain your sanity: an accessible, efficient and global approach. Access Microbiology, 4(5). doi:10.1099/acmi.ac2021.po0349DOI: 10.1099/acmi.ac2021.po0349
Darboe, S., Bradbury, R. S., Phelan, J., Kanteh, A., Muhammad, A. -K., Worwui, A., . . . Antonio, M. (2022). Genomic diversity and antimicrobial resistance among non- typhoidal<i> Salmonella</i> associated with human disease in The Gambia. MICROBIAL GENOMICS, 8(3). doi:10.1099/mgen.0.000785DOI: 10.1099/mgen.0.000785
2021
Perez-Sepulveda, B. M., Heavens, D., Pulford, C. V., Predeus, A. V., Low, R., Webster, H., . . . Hall, N. (2021). An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes. GENOME BIOLOGY, 22(1). doi:10.1186/s13059-021-02536-3DOI: 10.1186/s13059-021-02536-3
Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study (Journal article)
Kasumba, I. N., Pulford, C. V., Perez-Sepulveda, B. M., Sen, S., Sayed, N., Permala-Booth, J., . . . Tennant, S. M. (2021). Characteristics of <i>Salmonella</i> Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. CLINICAL INFECTIOUS DISEASES, 73(4), 631-641. doi:10.1093/cid/ciab051DOI: 10.1093/cid/ciab051
Perez-Sepulveda, B. M., Predeus, A. V., Fong, W. Y., Parry, C. M., Cheesbrough, J., Wigley, P., . . . Hinton, J. C. D. (2021). Complete Genome Sequences of African <i>Salmonella enterica</i> Serovar Enteritidis Clinical Isolates Associated with Bloodstream Infection. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10(12). doi:10.1128/MRA.01452-20DOI: 10.1128/MRA.01452-20
Isolation and Characterisation of Bacteriophages with Activity against Invasive Non-Typhoidal Salmonella Causing Bloodstream Infection in Malawi. (Journal article)
Rodwell, E., Wenner, N., Pulford, C., Cai, Y., Bowers-Barnard, A., Beckett, A., . . . Perez Sepulveda, B. (n.d.). Isolation and characterisation of bacteriophages with activity against invasive non-typhoidal Salmonella causing bloodstream infection in Malawi. Viruses. doi:10.3390/v13030478DOI: 10.3390/v13030478
Detection of Bacteriophages: Sequence-Based Systems (Chapter)
Owen, S. V., Perez-Sepulveda, B. M., & Adriaenssens, E. M. (2021). Detection of Bacteriophages: Sequence-Based Systems. In Bacteriophages (pp. 621-644). Springer International Publishing. doi:10.1007/978-3-319-41986-2_19DOI: 10.1007/978-3-319-41986-2_19
2020
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa (Journal article)
Pulford, C., Perez-Sepulveda, B. M., Canals, R., Bevington, J. A., Bengtsson, R. J., Wenner, N., . . . Hinton, J. (2020). Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology. doi:10.1038/s41564-020-00836-1DOI: 10.1038/s41564-020-00836-1
Wilson, C. N., Pulford, C. V., Akoko, J., Perez Sepulveda, B., Predeus, A. V., Bevington, J., . . . Fevre, E. M. (2020). <i>Salmonella</i> identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets. PLOS NEGLECTED TROPICAL DISEASES, 14(11). doi:10.1371/journal.pntd.0008796DOI: 10.1371/journal.pntd.0008796
Identification of genes that contribute to fitness of African and Global clades of Salmonella Enteritidis during infection of macrophages (Journal article)
Yee Fong, W., Canals, R., Predeus, A., Perez-Sepulveda, B., & A. Feasey, N. (2020). Identification of genes that contribute to fitness of African and Global clades of Salmonella Enteritidis during infection of macrophages. Access Microbiology, 2(7A). doi:10.1099/acmi.ac2020.po0739DOI: 10.1099/acmi.ac2020.po0739
2019
Pulford, C. V., Perez-Sepulveda, B. M., Rodwell, E. V., Weill, F. -X., Baker, K. S., & Hinton, J. C. D. (2019). <i>Salmonella enterica</i> Serovar Panama, an Understudied Serovar Responsible for Extraintestinal Salmonellosis Worldwide. INFECTION AND IMMUNITY, 87(9). doi:10.1128/IAI.00273-19DOI: 10.1128/IAI.00273-19
Lacharme-Lora, L., Owen, S. V., Blundell, R., Canals, R., Wenner, N., Perez-Sepulveda, B., . . . Hinton, J. C. D. (2019). The use of chicken and insect infection models to assess the virulence of African Salmonella Typhimurium ST313. PLOS NEGLECTED TROPICAL DISEASES, 13(7). doi:10.1371/journal.pntd.0007540DOI: 10.1371/journal.pntd.0007540
Li, Y., Pulford, C., Díaz, P., Perez-Sepulveda, B., Duarte, C., Predeus, A., . . . Hinton, J. (2019). Genomic and phylogenetic analysis ofSalmonellaTyphimurium and its monophasic variants responsible for invasive endemic infections in Colombia. doi:10.1101/588608DOI: 10.1101/588608
Detection of Bacteriophages: Sequence-Based Systems (Chapter)
Owen, S. V., Perez-Sepulveda, B. M., & Adriaenssens, E. M. (2019). Detection of Bacteriophages: Sequence-Based Systems. In Bacteriophages (pp. 1-25). Springer International Publishing. doi:10.1007/978-3-319-40598-8_19-1DOI: 10.1007/978-3-319-40598-8_19-1
2018
Functional Transcriptomics for Bacterial Gene Detectives (Chapter)
Perez-Sepulveda, B. M., & Hinton, J. C. D. (n.d.). Functional Transcriptomics for Bacterial Gene Detectives. In Regulating with RNA in Bacteria and Archaea (pp. 547-561). ASM Press. doi:10.1128/9781683670247.ch32DOI: 10.1128/9781683670247.ch32
Functional Transcriptomics for Bacterial Gene Detectives (Journal article)
Perez-Sepulveda, B. M., & Hinton, J. C. D. (2018). Functional Transcriptomics for Bacterial Gene Detectives. MICROBIOLOGY SPECTRUM, 6(5). doi:10.1128/microbiolspec.RWR-0033-2018DOI: 10.1128/microbiolspec.RWR-0033-2018
Relative stability of ploidy in a marine <i>Synechococcus</i> across various growth conditions (Journal article)
Perez-Sepulveda, B., Pitt, F., N'Guyen, A. N., Ratin, M., Garczarek, L., Millard, A., & Scanlan, D. J. (2018). Relative stability of ploidy in a marine <i>Synechococcus</i> across various growth conditions. ENVIRONMENTAL MICROBIOLOGY REPORTS, 10(4), 428-432. doi:10.1111/1758-2229.12614DOI: 10.1111/1758-2229.12614
2016
Sepulveda, B. P., Redgwell, T., Rihtman, B., Pitt, F., Scanlan, D. J., & Millard, A. (2016). Marine phage genomics: the tip of the iceberg. FEMS MICROBIOLOGY LETTERS, 363(15). doi:10.1093/femsle/fnw158DOI: 10.1093/femsle/fnw158
2015
Lea-Smith, D. J., Biller, S. J., Davey, M. P., Cotton, C. A. R., Sepulveda, B. M. P., Turchyn, A. V., . . . Howe, C. J. (2015). Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(44), 13591-13596. doi:10.1073/pnas.1507274112DOI: 10.1073/pnas.1507274112
Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage (Journal article)
Puxty, R. J., Perez-Sepulveda, B., Rihtman, B., Evans, D. J., Millard, A. D., & Scanlan, D. J. (2015). Spontaneous Deletion of an "ORFanage" Region Facilitates Host Adaptation in a "Photosynthetic" Cyanophage. PLOS ONE, 10(7). doi:10.1371/journal.pone.0132642DOI: 10.1371/journal.pone.0132642
