2023
Camacho, O. M., Ramsbottom, K. A., Collins, A., & Jones, A. R. (2023). Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets. JOURNAL OF PROTEOME RESEARCH, 22(6), 1828-1842. doi:10.1021/acs.jproteome.2c00823DOI: 10.1021/acs.jproteome.2c00823
Prakash, A., Garcia-Seisdedos, D., Wang, S., Kundu, D. J., Collins, A., George, N., . . . Vizcaino, J. A. (2023). Integrated View of Baseline Protein Expression in Human Tissues. JOURNAL OF PROTEOME RESEARCH, 22(3), 729-742. doi:10.1021/acs.jproteome.2c00406DOI: 10.1021/acs.jproteome.2c00406
2022
Assessing multiple evidence streams to decide on confidence for identification of post-translational modifications, within and across data sets (Preprint)
DOI: 10.1101/2022.12.15.520504
Wang, S., Garcia-Seisdedos, D. R., Prakash, A., Kundu, D. J., Collins, A., George, N., . . . Vizcaino, J. A. (2022). Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLOS COMPUTATIONAL BIOLOGY, 18(6). doi:10.1371/journal.pcbi.1010174DOI: 10.1371/journal.pcbi.1010174
2021
2019
Proteomics Standards Initiative Extended FASTA Format (Journal article)
Binz, P. -A., Shofstahl, J., Vizcaino, J. A., Barsnes, H., Chalkley, R. J., Menschaert, G., . . . Deutsch, E. W. (2019). Proteomics Standards Initiative Extended FASTA Format. JOURNAL OF PROTEOME RESEARCH, 18(6), 2686-2692. doi:10.1021/acs.jproteome.9b00064DOI: 10.1021/acs.jproteome.9b00064
2018
phpMs: A PHP-Based Mass Spectrometry Utilities Library (Journal article)
Collins, A., & Jones, A. R. (2018). phpMs: A PHP-Based Mass Spectrometry Utilities Library. JOURNAL OF PROTEOME RESEARCH, 17(3), 1309-1313. doi:10.1021/acs.jproteome.7b00783DOI: 10.1021/acs.jproteome.7b00783
2014
ProteoAnnotator – Open source proteogenomics annotation software supporting PSI standards (Journal article)
Ghali, F., Krishna, R., Perkins, S., Collins, A., Xia, D., Wastling, J., & Jones, A. R. (2014). ProteoAnnotator – Open source proteogenomics annotation software supporting PSI standards. Proteomics, 14(23-24), 2731-2741. doi:10.1002/pmic.201400265DOI: 10.1002/pmic.201400265
2013
Optimal patrolling of fragmented boundaries (Conference Paper)
Collins, A., Czyzowicz, J., Gasieniec, L., Kosowski, A., Kranakis, E., Krizanc, D., . . . Morales Ponce, O. (2013). Optimal patrolling of fragmented boundaries. In Proceedings of the twenty-fifth annual ACM symposium on Parallelism in algorithms and architectures. ACM. doi:10.1145/2486159.2486176DOI: 10.1145/2486159.2486176
Collins, A. (2013). Distributed Navigation. (PhD Thesis, University of Liverpool).
2011
Synchronous Rendezvous for Location-Aware Agents (Conference Paper)
Collins, A., Czyzowicz, J., Gasieniec, L., Kosowski, A., & Martin, R. (2011). Synchronous Rendezvous for Location-Aware Agents. In DISTRIBUTED COMPUTING Vol. 6950 (pp. 447-+). Retrieved from https://www.webofscience.com/
2010
Tell Me Where I Am So I Can Meet You Sooner (Conference Paper)
Collins, A., Czyzowicz, J., Gąsieniec, L., & Labourel, A. (2010). Tell Me Where I Am So I Can Meet You Sooner. In Unknown Conference (pp. 502-514). Springer Berlin Heidelberg. doi:10.1007/978-3-642-14162-1_42DOI: 10.1007/978-3-642-14162-1_42
2009
2D Graph Exploration Using Irrational Numbers (Thesis / Dissertation)
Collins, A. (2009). 2D Graph Exploration Using Irrational Numbers. (Master's Thesis, University of Liverpool).
